CX046770

Overview
NameCX046770
Unique NameCX046770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046770_ssr116 microsatellite CX046770_ssr116:116..130. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3805 contig Csv1_Contig3805:152..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.017e-39
Identity = 83/128 (64.84%), Postives = 97/128 (75.78%), Query Frame = -2
Query:  368 FSLDIWDPFEGF------SSSVANIPSSAR----ETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FSLD+WDPF+GF      SSS +  PS  R    ET+A A  RIDWKETPEAHVFKAD+PGL         +DG +LQISGER++EQEEK D+WHRVERSSGKF+RRF LP+NAK +QI+ASMENGVL
Sbjct:   13 FSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVL 140          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.635e-39
Identity = 81/139 (58.27%), Postives = 100/139 (71.94%), Query Frame = -2
Query:  308 FSLDIWDPFEGF-SSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 721
            FSLD+WDPFEGF +  + N P  A++ +A  N ++DW+ETPEAHVFKAD+PGL         EDG +LQISGERS E EEK+D WHRVERSSGKFMRRF LPENAK+++++ASMENGVL              K++DIS
Sbjct:   19 FSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDIS 155          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.441e-39
Identity = 85/139 (61.15%), Postives = 99/139 (71.22%), Query Frame = -2
Query:  308 FSLDIWDPFEGFSSSVANIPSS-ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 721
            FSLD+WDPF+ F       PSS + E SA  +TR+DWKETPEAHVFKAD+PGL         +DGRVLQISGER+ E+E+KND WHRVERSSGK +RRF LPENAK+DQ++ASMENGVL              KAIDIS
Sbjct:   19 FSLDVWDPFKDFP-----FPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDIS 152          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.441e-39
Identity = 81/121 (66.94%), Postives = 92/121 (76.03%), Query Frame = -2
Query:  368 FSLDIWDPFEGF---SSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FSLD+WDPF+GF   S S +  P +  + +A A  RIDWKETPEAHVFKAD+PGL         EDG VLQISGER +EQEEK DKWHRVERSSGKF+RRF LPEN K +QI+ASMENGVL
Sbjct:   13 FSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVL 133          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.665e-39
Identity = 80/126 (63.49%), Postives = 93/126 (73.81%), Query Frame = -2
Query:  368 FSLDIWDPFEGF--------SSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FSLD+WDP +GF        SSS +  P +  + +A A  RIDWKETPE HVFKAD+PGL         +DG +LQISGERSREQEEK+DKWHRVERSSGKF+RRF LPEN K +QI+ASMENGVL
Sbjct:   13 FSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVL 138          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.001e-38
Identity = 80/119 (67.23%), Postives = 94/119 (78.99%), Query Frame = -2
Query:  368 FSLDIWDPFEGFSSSVANIPSS-ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FSLD+WDP + F  S ++  +S  RE  A  +TR+DWKETPEAHVFKADLPGL         ED RVLQISGERS E+E+KND+WHRVERSSGKF+RRF LPENAKMD+++ASMENGVL
Sbjct:   19 FSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVL 137          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.708e-38
Identity = 82/138 (59.42%), Postives = 98/138 (71.01%), Query Frame = -2
Query:  308 FSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 721
            FSLD+WDPF+    SV    S   +T+A AN RIDWKETPE+HVFKADLPG+         E+G VL ISG+RS+E+E+KNDKWHRVERSSG+FMRRF LPENAK+DQ++A MENGVL              KAI+IS
Sbjct:   13 FSLDLWDPFDSVFRSVVPATSD-NDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEIS 149          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.804e-38
Identity = 83/139 (59.71%), Postives = 99/139 (71.22%), Query Frame = -2
Query:  308 FSLDIWDPFEGFSSSVANIPSS-ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 721
            FSLD+WDPF+ F     + P+S + E SA  NTR+DWKETPEAHVF+AD+PGL         ED RVLQISGER+ E+E+KND WHRVERSSG FMRRF LPENAK++Q++ASMENGVL              KAI+IS
Sbjct:   19 FSLDVWDPFKDF-----HFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEIS 152          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.804e-38
Identity = 81/118 (68.64%), Postives = 91/118 (77.12%), Query Frame = -2
Query:  368 FSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 721
            FS+D++DPF        N    + ETSA ANTRIDWKETPEAHVFKADLPGL         E+ RVLQISGER+ E+E+KNDKW RVERSSGKFMRRF LPENAKMDQ++ASMENGVL
Sbjct:   20 FSIDVFDPFRELGFPGTN----SGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVL 133          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.804e-38
Identity = 81/138 (58.70%), Postives = 98/138 (71.01%), Query Frame = -2
Query:  308 FSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXKAIDIS 721
            FSLD+WDPF+    SV    S   +T+A AN RIDWKETPE+HVFKADLPG+         E+G VL ISG+RS+E+E+KNDKWHRVERSSG+FMRRF LPENAK+DQ++A +ENGVL              KAI+IS
Sbjct:   13 FSLDLWDPFDSVFRSVVPATSD-NDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEIS 149          
The following BLAST results are available for this feature:
BLAST of CX046770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS17A_ORYSJ2.017e-3964.8417.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP17_ARATH2.635e-3958.2717.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_SOYBN3.441e-3961.1517.3 kDa class I heat shock protein OS=Glycine max... [more]
HS174_ORYSJ3.441e-3966.9417.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS177_ORYSJ7.665e-3963.4917.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_PEA1.001e-3867.2318.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HS16B_ORYSJ1.708e-3859.4216.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HSP13_SOYBN3.804e-3859.7117.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLPE3.804e-3868.6417.7 kDa class I heat shock protein OS=Solanum per... [more]
HS16A_ORYSJ3.804e-3858.7016.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B01-D1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046770 ID=CX046770; Name=CX046770; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTTTTTTTTTACATTATTTCTATAAGCTTAATTTACAACAAAC
ATTTTATAACTTCATGTATAATACACATGAGATCACATCACAAAAGTACA
ACCAGAAACACAAAAACAAGACAAGACAAGTAGACAACACTACACTACAA
TATTATTTACTATTATTATTCAGACAGAAAAAAAAACTGATCAAAAGGCC
AAAAAACCCTACTTGATTTAGTTAAAGCCATGTGCATGGATGTATATGTA
GATGACATATCATTTTGTATGACAACTTGTTTCTCGGCCTCGGGCTCAAC
CTCAGGCAGAAATGTCAATAGCCTTAACCTCAGGCTTCTTAACATCCTCT
TTAGGGACAGTGACAGTAAGCACACCGTTCTCCATGCTAGCTCTGATCTG
ATCCATCTTGGCATTCTCAGGCAACCCGAACCTCCTCATGAACTTTCCAC
TGCTCCTCTCAACACGGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTCTG
CTCCTCTCTCCACTTATCTGCAGAACCCTTCCATCTTCAACCTCCACCTT
CACCTCTTCCTTCTTCAGCCCCGGAAGATCAGCCTTAAACACATGAGCTT
CTGGGGTCTCTTTCCAGTCAATTCTTGTGTTGGCTAAGGCTGATGTTTCC
CTTGCTGAGGACGGAATATTAGCGACTGACGATGAGAACCCTTCAAAGGG
ATCCCATATGTCCAGTGAAAAC
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