CX046770

Overview
NameCX046770
Unique NameCX046770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046770_ssr116 microsatellite CX046770_ssr116:116..130. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3805 contig Csv1_Contig3805:152..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = -2
Query:  368 SSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDG-RVLQISGERSR-----EQEEKND--KWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 661
            ++A E +A+A  R DWKETPEAHV   D+PG+         ++  RVL++SGER R     E+E + D  +WHR ER++G+F RRF +P  A + ++ A +++GVL
Sbjct:   61 AAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVL 166          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = -2
Query:  368 SSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 661
            S  R+  A+A T  D KE P ++VF+ D+PGL         ED  +L I GER R++E++  K+ R+ER  GK MR+F LPENA  D I A  ++GVL
Sbjct:   39 SYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVL 136          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = -2
Query:  368 PSSA--RETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 664
            PS A  R+  A+A T  D KE P ++VF  D+PGL         E   VL ISG+R+RE+E++  K+ R+ER  GKFM++F LPE+A  D+I A  ++GVL
Sbjct:   37 PSRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVL 137          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.719e-15
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = -2
Query:  368 RETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 652
            R+  A+A T  D KE P ++VF  D+PG+         ED  VL ISGER RE+E++  K+ ++ER  GK MR+F LPENA ++ I A  ++GVL
Sbjct:   35 RDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVL 129          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.008e-14
Identity = 47/94 (50.00%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  368 ETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 649
            +  A+A T  D KE P A+ F  D+PGL         ED RVL ISGER RE+ E + K+ R+ER  GKFMR+F LP+NA MD+I A   +GVL
Sbjct:   46 DARAMAVTPADVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVL 138          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = -2
Query:  368 IPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKND--KWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 667
            I +  R+  A+A T  D KE P ++VF AD+PG+         ED  VL +SGER+  ++++ D  K+ R+ER  GKFMR+F LPENA ++ I A  ++GVL
Sbjct:   43 IRAYVRDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVL 144          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.534e-14
Identity = 45/95 (47.37%), Postives = 59/95 (62.11%), Query Frame = -2
Query:  368 RETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 652
            R+  A+A T  D KE   A+ F  D+PGL         ED RVL ISGER RE+ E + K+ R+ER  GKFMR+F LP+NA +D++ A   +GVL
Sbjct:   38 RDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVL 131          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.534e-14
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = -2
Query:  368 RETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSR----EQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 652
            R+  A+A T  D K+ P A+ F  D+PGL         E+ R+L ISGER R    E++E++ K+ R+ER  GKFMR+F LP+NA +D+I A  ++GVL
Sbjct:   45 RDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVL 143          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = -2
Query:  368 SSVANIPSSA--RETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKND-KWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 682
            SS ++ PS     +  A+A T  D KE P ++VF  D+PGL         +   VL ISGER RE EEK   K+ R+ER  GK MR+F LPENA  ++I A  ++GVL
Sbjct:   25 SSNSSAPSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVL 132          
BLAST of CX046770 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  368 IDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSREQEEKNDKWHRVERSS-----GKFMRRFGLPENAKMDQIRASMENGVL 622
            IDW E+  +H+FK ++PG          E+G VL I GE  +E++++N  WH  ER +      +F+RR  LPEN K+DQ++A +ENGVL
Sbjct:   24 IDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVL 113          
The following BLAST results are available for this feature:
BLAST of CX046770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS219_ORYSJ5.346e-1642.4521.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOYBN4.525e-1544.9017.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_HELAN5.910e-1545.5417.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP21_PEA7.719e-1545.2617.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_MAIZE1.008e-1450.0017.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP22_IPONI1.720e-1443.1418.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP23_MAIZE6.534e-1447.3717.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP18_ORYSJ8.534e-1444.4418.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_IPONI1.115e-1344.4417.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HS157_ARATH1.115e-1342.2215.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B01-D1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046770 ID=CX046770; Name=CX046770; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTTTTTTTTTACATTATTTCTATAAGCTTAATTTACAACAAAC
ATTTTATAACTTCATGTATAATACACATGAGATCACATCACAAAAGTACA
ACCAGAAACACAAAAACAAGACAAGACAAGTAGACAACACTACACTACAA
TATTATTTACTATTATTATTCAGACAGAAAAAAAAACTGATCAAAAGGCC
AAAAAACCCTACTTGATTTAGTTAAAGCCATGTGCATGGATGTATATGTA
GATGACATATCATTTTGTATGACAACTTGTTTCTCGGCCTCGGGCTCAAC
CTCAGGCAGAAATGTCAATAGCCTTAACCTCAGGCTTCTTAACATCCTCT
TTAGGGACAGTGACAGTAAGCACACCGTTCTCCATGCTAGCTCTGATCTG
ATCCATCTTGGCATTCTCAGGCAACCCGAACCTCCTCATGAACTTTCCAC
TGCTCCTCTCAACACGGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTCTG
CTCCTCTCTCCACTTATCTGCAGAACCCTTCCATCTTCAACCTCCACCTT
CACCTCTTCCTTCTTCAGCCCCGGAAGATCAGCCTTAAACACATGAGCTT
CTGGGGTCTCTTTCCAGTCAATTCTTGTGTTGGCTAAGGCTGATGTTTCC
CTTGCTGAGGACGGAATATTAGCGACTGACGATGAGAACCCTTCAAAGGG
ATCCCATATGTCCAGTGAAAAC
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