CX046769

Overview
NameCX046769
Unique NameCX046769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046769_ssr21 microsatellite CX046769_ssr21:21..32. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046769_ssr78 microsatellite CX046769_ssr78:78..87. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046769_ssr744 microsatellite CX046769_ssr744:744..758. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3805 contig Csv1_Contig3805:1..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.672e-44
Identity = 93/136 (68.38%), Postives = 102/136 (75.00%), Query Frame = 3
Query:  129 RRSNVFDPFSLDIWDPFEGFS------SSVANIPSSAR----ETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            RRSNVFDPFSLD+WDPF+GF       SS +  PS  R    ET+A A  RIDWKETPEAHVFKAD+PGL          DG VLQISGERS+EQEEK DKWHRVERSSGKF+RRF LPEN K +QI+ASMENGVL
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVL 140          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.852e-44
Identity = 91/136 (66.91%), Postives = 104/136 (76.47%), Query Frame = 3
Query:  129 RRSNVFDPFSLDIWDPFEGF------SSSVANIPSSAR----ETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            RRSNVFDPFSLD+WDPF+GF      SSS +  PS  R    ET+A A  RIDWKETPEAHVFKAD+PGL          DG +LQISGER++EQEEK D+WHRVERSSGKF+RRF LP+NAK +QI+ASMENGVL
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVL 140          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.865e-44
Identity = 88/129 (68.22%), Postives = 99/129 (76.74%), Query Frame = 3
Query:  129 RRSNVFDPFSLDIWDPFEGF---SSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            RRSNVFDPFSLD+WDPF+GF   S S +  P +  + +A A  RIDWKETPEAHVFKAD+PGL          DG VLQISGER +EQEEK DKWHRVERSSGKF+RRF LPEN K +QI+ASMENGVL
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVL 133          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.084e-43
Identity = 90/148 (60.81%), Postives = 106/148 (71.62%), Query Frame = 3
Query:  126 GRRSNVFDPFSLDIWDPFEGFSSSVANIPSS-ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            GRRSNVFDPFSLD+WDPF+ F     + P+S + E SA  NTR+DWKETPEAHVF+AD+PGL          D RVLQISGER+ E+E+KND WHRVERSSG FMRRF LPENAK++Q++ASMENGVL               AI+IS
Sbjct:   10 GRRSNVFDPFSLDVWDPFKDF-----HFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEIS 152          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.414e-43
Identity = 88/146 (60.27%), Postives = 104/146 (71.23%), Query Frame = 3
Query:  129 RRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            RRSNVFDPFSLD+WDPF+    SV    S   +T+A AN RIDWKETPE+HVFKADLPG+          +G VL ISG+RS+E+E+KNDKWHRVERSSG+FMRRF LPENAK+DQ++A MENGVL               AI+IS
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSD-NDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEIS 149          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.153e-43
Identity = 88/150 (58.67%), Postives = 106/150 (70.67%), Query Frame = 3
Query:  117 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            F  GRRSNVFDPFSLD+WDPF+ F    +++ +   E SA  +TR+DWKETPEAHVFKAD+PGL          D RVLQISGER+ E+E+KND WHRVERSSGKF RRF LPENAK+++++ASMENGVL               AI+IS
Sbjct:    7 FFGGRRSNVFDPFSLDMWDPFKDFHVPTSSVSA---ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEIS 153          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.153e-43
Identity = 87/131 (66.41%), Postives = 103/131 (78.63%), Query Frame = 3
Query:  114 LFDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            +F   R ++VFDPFS+D++DPF+    +V+N    + ETSA ANTRIDWKETPEAHVFKADLPGL          + RVLQISGER+ E+E+KND WHRVERSSGKFMRRF LPENAKMDQ++ASMENGVL
Sbjct:    7 IFGDRRSTSVFDPFSIDVFDPFKELGFTVSN----SGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVL 133          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.378e-43
Identity = 87/146 (59.59%), Postives = 104/146 (71.23%), Query Frame = 3
Query:  129 RRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            RRSNVFDPFSLD+WDPF+    SV    S   +T+A AN RIDWKETPE+HVFKADLPG+          +G VL ISG+RS+E+E+KNDKWHRVERSSG+FMRRF LPENAK+DQ++A +ENGVL               AI+IS
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSD-NDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEIS 149          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.174e-43
Identity = 86/134 (64.18%), Postives = 98/134 (73.13%), Query Frame = 3
Query:  129 RRSNVFDPFSLDIWDPFEGF--------SSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            RR N FDPFSLD+WDP +GF        SSS +  P +  + +A A  RIDWKETPE HVFKAD+PGL          DG +LQISGERSREQEEK+DKWHRVERSSGKF+RRF LPEN K +QI+ASMENGVL
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVL 138          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.198e-42
Identity = 84/135 (62.22%), Postives = 102/135 (75.56%), Query Frame = 3
Query:  102 MALSLFDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            M  S F++ RRSN+FDPFSLD+WDPF+  +SS     S +RE SA+ N R+DW+ETPEAHVFKADLPGL          +  VL+ISGER  E+E+KND WHRVERSSG+F RRF LPEN KMDQ++A+MENGVL
Sbjct:    3 MIPSFFNNNRRSNIFDPFSLDVWDPFKELTSS-----SLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVL 132          
The following BLAST results are available for this feature:
BLAST of CX046769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS181_ORYSJ1.672e-4468.3818.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS17A_ORYSJ2.852e-4466.9117.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ4.865e-4468.2217.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP13_SOYBN1.084e-4360.8117.5 kDa class I heat shock protein OS=Glycine max... [more]
HS16B_ORYSJ2.414e-4360.2716.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HSP14_SOYBN3.153e-4358.6717.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE3.153e-4366.4117.6 kDa class I heat shock protein OS=Solanum per... [more]
HS16A_ORYSJ5.378e-4359.5916.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS177_ORYSJ9.174e-4364.1817.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS17B_ARATH1.198e-4262.2217.6 kDa class I heat shock protein 2 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B01-D1-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046769 ID=CX046769; Name=CX046769; organism=Citrus sinensis; type=EST; length=872bp
AAAATTTATTATACATTAGTACACACACACACAGAAACAGAAGCAAACGC
AGCAAATTAAGCTACGTACATAGTGAAACACACACACGTACACACAGCGA
CATGGCTTTGAGTCTTTTTGATAGTGGCCGGAGGAGCAACGTGTTCGATC
CGTTTTCACTGGACATATGGGATCCCTTTGAAGGGTTCTCATCGTCAGTC
GCTAATATTCCGTCCTCAGCAAGGGAAACATCAGCCTTAGCCAACACAAG
AATTGACTGGAAAGAGACCCCAGAAGCTCATGTGTTTAAGGCTGATCTTC
CGGGGCTGAAGAAGGAAGAGGTGAAGGTGGAGGTTGAAGATGGAAGGGTT
CTGCAGATAAGTGGAGAGAGGAGCAGAGAGCAGGAGGAGAAGAACGACAA
GTGGCACCGTGTTGAGAGGAGCAGTGGAAAGTTCATGAGGAGGTTCGGGT
TGCCTGAGAATGCCAAGATGGATCAGATCAGAGCTAGCATGGAGAACGGT
GTGCTTACTGTCACTGTCCCTAAAGAGGATGTTAAGAAGCCTGAGGTTAA
GGCTATTGACATTTCTGCCTGAGGTTGAGCCCGAGGCCGAGAAACAAGTT
GTCATACAAAATGATATGTCATCTACATATACATCCATGCACATGGCTTT
AACTAAATCAAGTAGGGTTTTTTGGCCTTTTGATCAGTTTTCTCTTCTGT
CTGAATAATAATAGTAAATAATATTGTAGTGTAGTGTTGTCTACTTGTCT
TGTCTTGTTTTTGTGTTTCTGGTTGTACTTTTGTGATGTGATCTCATGTG
TATTATACATGAAGTTATAAAATGTTTGTTGTAAATTAAGCTTATAGAAA
TAATGTAAAAAAAAAAAAAAAA
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