CX046769

Overview
NameCX046769
Unique NameCX046769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046769_ssr21 microsatellite CX046769_ssr21:21..32. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046769_ssr78 microsatellite CX046769_ssr78:78..87. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046769_ssr744 microsatellite CX046769_ssr744:744..758. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3805 contig Csv1_Contig3805:1..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.486e-42
Identity = 87/146 (59.59%), Postives = 105/146 (71.92%), Query Frame = 3
Query:  129 RRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            RRSNVFDPF+ D WDPF+G   S+    S  R+T+A AN R+DWKETPE+HVFKADLPG+          +G VL ISG+RS+E+E+KNDKWHRVERSSG+FMRRF LPENAK+DQ++ASMENGVL               AI+IS
Sbjct:    5 RRSNVFDPFA-DFWDPFDGVFRSLVPATSD-RDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEIS 148          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.947e-42
Identity = 83/132 (62.88%), Postives = 102/132 (77.27%), Query Frame = 3
Query:  117 FDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSS--ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            F   RRSNV +PFSLDIWDPF+ +    ++  SS   +ET+A ANT IDWKETP+AHVFKADLPGL          +G+VLQISGER++E+EEKN+KWHRVE SSGKF+RRF LPENA +D+++A MENGVL
Sbjct:    7 FFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVL 138          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.947e-42
Identity = 86/131 (65.65%), Postives = 99/131 (75.57%), Query Frame = 3
Query:  114 LFDSGRRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            +F   R S++FDPFS+D++DPF        N    + ETSA ANTRIDWKETPEAHVFKADLPGL          + RVLQISGER+ E+E+KNDKW RVERSSGKFMRRF LPENAKMDQ++ASMENGVL
Sbjct:    7 IFGDRRSSSMFDPFSIDVFDPFRELGFPGTN----SGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVL 133          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.014e-41
Identity = 86/143 (60.14%), Postives = 103/143 (72.03%), Query Frame = 3
Query:  147 DPFSLDIWDPFEGF--SSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDISA 569
            DPFSLD+WDPF+ F  ++S  +  S  +E SA  +TRIDWKETPEAHVFKADLPGL          D RVLQISGER+ E+E+KND+WHRVERSSGKFMRRF LPENAKMDQ++A+MENGVL               +I+IS+
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEISS 143          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.951e-41
Identity = 85/133 (63.91%), Postives = 102/133 (76.69%), Query Frame = 3
Query:  114 LFDSGRRSNVFDPFSLDIWDPFE--GFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            +F   R S++FDPFS+D++DPF   GF S+      ++ E+SA ANTRIDWKETPE HVFK DLPGL          + RVLQISGER+ E+E+KNDKWHR+ERSSGKFMRRF LPENAKMDQ++ASMENGVL
Sbjct:    7 IFGDRRSSSMFDPFSIDVFDPFRELGFPST------NSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVL 133          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.854e-41
Identity = 85/147 (57.82%), Postives = 104/147 (70.75%), Query Frame = 3
Query:  129 RRSNVFDPFSLDIW-DPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            RRSNVFDPF+ D+W DPF+ F S V  I   + ET+A AN R+DWKETPEAHVFK DLPG+          DG VL +SGERSRE+E+KNDKWHRVERSSGKF+RRF LPE+AK+++++A +ENGVL               AI+IS
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGSSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEIS 150          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.575e-41
Identity = 81/127 (63.78%), Postives = 97/127 (76.38%), Query Frame = 3
Query:  126 GRRSNVFDPFSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            G RSNVFDPFSLD+WDPF+ F    +++ +   E SA  NTR+DWKET EAHV KAD+PGL          D RVLQISGER+ E+E+KND WHRV+RSSGKFMRRF LPENAK++Q++A MENGVL
Sbjct:   10 GPRSNVFDPFSLDMWDPFKDFHVPTSSVSA---ENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVL 133          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.712e-39
Identity = 83/134 (61.94%), Postives = 97/134 (72.39%), Query Frame = 3
Query:  111 SLFDSGRRSN-VFDPFSLDIWDPFEGFSSSVANIPSS-ARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            S F + RRSN +FDPFSLD+WDPF+         PSS + ETSA+ N R+DWKET EAHVFKADLPG+          D  VL+ISGER  E+EEK D WHRVERSSG+F R+F LPEN KMDQ++ASMENGVL
Sbjct:    6 SFFGNNRRSNSIFDPFSLDVWDPFKELQ-----FPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVL 134          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.037e-39
Identity = 82/147 (55.78%), Postives = 102/147 (69.39%), Query Frame = 3
Query:  129 RRSNVFDPFSLDIW-DPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVLXXXXXXXXXXXXXXXAIDIS 566
            RR+NVFDPF+ D+W DPF+ F S V  I     ET+A AN R+DWKETPEAHVFKADLPG+          DG VL +SGER++E+E+KNDKWHRVERSSGKF+RRF L E+AK+++++A +ENGVL               AI IS
Sbjct:    5 RRTNVFDPFA-DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQIS 150          
BLAST of CX046769 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.886e-38
Identity = 81/134 (60.45%), Postives = 96/134 (71.64%), Query Frame = 3
Query:  111 SLFDSGRR--SNVFDPFSLDIWDPFEGFSSSVANIPSSARETSALANTRIDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSREQEEKNDKWHRVERSSGKFMRRFGLPENAKMDQIRASMENGVL 506
            S F + RR  +N+FDPFSLD+WDPF+         PSS+  +SA+AN R+DWKET EAHVFKADLPG+          D  VL+ISGER  E+EEK D WHRVERSSG F R+F LPEN KMDQ++ASMENGVL
Sbjct:    6 SFFGNNRRINNNIFDPFSLDVWDPFKELQ-----FPSSS--SSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVL 132          
The following BLAST results are available for this feature:
BLAST of CX046769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS16C_ORYSJ3.486e-4259.5916.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP12_DAUCA5.947e-4262.8818.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP11_SOLPE5.947e-4265.6517.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_MEDSA1.014e-4160.1418.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP11_SOLLC2.951e-4163.9117.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS16A_WHEAT3.854e-4157.8216.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP15_SOYBN6.575e-4163.7817.6 kDa class I heat shock protein OS=Glycine max... [more]
HS178_ARATH4.712e-3961.9417.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16B_WHEAT8.037e-3955.7816.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS17A_ARATH8.886e-3860.4517.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_10B01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B01-D1-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046769 ID=CX046769; Name=CX046769; organism=Citrus sinensis; type=EST; length=872bp
AAAATTTATTATACATTAGTACACACACACACAGAAACAGAAGCAAACGC
AGCAAATTAAGCTACGTACATAGTGAAACACACACACGTACACACAGCGA
CATGGCTTTGAGTCTTTTTGATAGTGGCCGGAGGAGCAACGTGTTCGATC
CGTTTTCACTGGACATATGGGATCCCTTTGAAGGGTTCTCATCGTCAGTC
GCTAATATTCCGTCCTCAGCAAGGGAAACATCAGCCTTAGCCAACACAAG
AATTGACTGGAAAGAGACCCCAGAAGCTCATGTGTTTAAGGCTGATCTTC
CGGGGCTGAAGAAGGAAGAGGTGAAGGTGGAGGTTGAAGATGGAAGGGTT
CTGCAGATAAGTGGAGAGAGGAGCAGAGAGCAGGAGGAGAAGAACGACAA
GTGGCACCGTGTTGAGAGGAGCAGTGGAAAGTTCATGAGGAGGTTCGGGT
TGCCTGAGAATGCCAAGATGGATCAGATCAGAGCTAGCATGGAGAACGGT
GTGCTTACTGTCACTGTCCCTAAAGAGGATGTTAAGAAGCCTGAGGTTAA
GGCTATTGACATTTCTGCCTGAGGTTGAGCCCGAGGCCGAGAAACAAGTT
GTCATACAAAATGATATGTCATCTACATATACATCCATGCACATGGCTTT
AACTAAATCAAGTAGGGTTTTTTGGCCTTTTGATCAGTTTTCTCTTCTGT
CTGAATAATAATAGTAAATAATATTGTAGTGTAGTGTTGTCTACTTGTCT
TGTCTTGTTTTTGTGTTTCTGGTTGTACTTTTGTGATGTGATCTCATGTG
TATTATACATGAAGTTATAAAATGTTTGTTGTAAATTAAGCTTATAGAAA
TAATGTAAAAAAAAAAAAAAAA
back to top