CX046766

Overview
NameCX046766
Unique NameCX046766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046766_ssr11 microsatellite CX046766_ssr11:11..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: GLUB4_ORYSJ (Glutelin type-B 4 OS=Oryza sativa subsp. japonica GN=GLUB4 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.933e-36
Identity = 80/206 (38.83%), Postives = 109/206 (52.91%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET----XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C    L A EP ++V SEAGVTE++D+ NEQ QC    V R+ I+ +GLLVP Y+NTP + Y++QGRG  G+ FPGC  T                      HQK+ Q R+GD++ALPAG AHW YN G   +V + + D+ N+ NQL+   ++F L GN   +                        N+F GF+  LL+EA  VN
Sbjct:   45 CRFDRLQAFEPLRRVRSEAGVTEYFDEKNEQFQCTGTFVIRRVIEPQGLLVPRYSNTPGMVYIIQGRGSMGLTFPGCPATYQQQFQQFLPEGQSQSQKFRDEHQKIHQFRQGDIVALPAGVAHWFYNEGDAPVVALYVFDLNNNANQLEPRQKEFLLAGNNNRE----------QQMYGRSIEQHSGQNIFSGFNNELLSEALGVN 240          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: GLUB1_ORYSJ (Glutelin type-B 1 OS=Oryza sativa subsp. japonica GN=GluB1-A PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 3.297e-36
Identity = 81/206 (39.32%), Postives = 106/206 (51.46%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET----XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C    L A EP +KV SEAGVTE++D+ NE  QC    V R+ IQ +GLLVP YTN P + Y++QGRG  G+ FPGC  T                      HQK+ Q R+GD++ALPAG AHW YN+G   +V V + DV N+ NQL+   ++F L GN                            N+F GF   +L+EA  +N
Sbjct:   45 CRFDRLQAFEPLRKVRSEAGVTEYFDEKNELFQCTGTFVIRRVIQPQGLLVPRYTNIPGVVYIIQGRGSMGLTFPGCPATYQQQFQQFSSQGQSQSQKFRDEHQKIHQFRQGDIVALPAGVAHWFYNDGDAPIVAVYVYDVNNNANQLEPRQKEFLLAGN--------NNRAQQQQVYGSSIEQHSGQNIFSGFGVEMLSEALGIN 242          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: 11S2_SESIN (11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.306e-36
Identity = 79/211 (37.44%), Postives = 111/211 (52.61%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAE---------TXXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYL-GGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNV 750
            C  Q ++  +P  +++SE G TE WD+  EQ QCA +   R  I+  GL +P Y  +P + Y+ +G+G+  ++ PGCAE         T                  HQKV +LR+GD++A+P+GAAHW YN+G + LV V++ DV +  NQLDQ FR FYL GG P+                          N+FR FD  LL+EAFNV
Sbjct:   34 CRFQRISGAQPSLRIQSEGGTTELWDERQEQFQCAGIVAMRSTIRPNGLSLPNYHPSPRLVYIERGQGLISIMVPGCAETYQVHRSQRTMERTEASEQQDRGSVRDLHQKVHRLRQGDIVAIPSGAAHWCYNDGSEDLVAVSINDVNHLSNQLDQKFRAFYLAGGVPR-------------SGEQEQQARQTFHNIFRAFDAELLSEAFNV 231          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: GLUA2_ORYSJ (Glutelin type-A 2 OS=Oryza sativa subsp. japonica GN=GLUA2 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.592e-36
Identity = 84/211 (39.81%), Postives = 108/211 (51.18%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET--------XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQ-PQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C    L A EP + V S+AG TEF+D +NE  QC  V+V R+ I+ RGLL+P YTN   + Y++QGRGI G  FPGC ET                          HQK+ + R+GDVIALPAG AHW YN+G   +V + + D+ N  NQLD   R F L GN + PQ                        N+F GF   LL+EAF ++
Sbjct:   46 CRFDRLQAFEPIRSVRSQAGTTEFFDVSNELFQCTGVSVVRRVIEPRGLLLPHYTNGASLVYIIQGRGITGPTFPGCPETYQQQFQQSGQAQLTESQSQSHKFKDEHQKIHRFRQGDVIALPAGVAHWCYNDGEVPVVAIYVTDINNGANQLDPRQRDFLLAGNKRNPQ-------------AYRREVEEWSQNIFSGFSTELLSEAFGIS 243          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: GLUA1_ORYSJ (Glutelin type-A 1 OS=Oryza sativa subsp. japonica GN=GLUA1 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.791e-35
Identity = 84/211 (39.81%), Postives = 108/211 (51.18%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAE--------TXXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQ-PQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C    L A EP + V S+AG TEF+D +NEQ QC  V+V R+ I+ RGLL+P YTN   + Y++QGRGI G  FPGC E        +                  HQK+ + R+GDVIALPAG AHW YN+G   +V + + D+ N  NQLD   R F L GN + PQ                        N+F GF   LL+EA  V+
Sbjct:   46 CRFDRLQAFEPIRSVRSQAGTTEFFDVSNEQFQCTGVSVVRRVIEPRGLLLPHYTNGASLVYIIQGRGITGPTFPGCPESYQQQFQQSGQAQLTESQSQSQKFKDEHQKIHRFRQGDVIALPAGVAHWCYNDGEVPVVAIYVTDLNNGANQLDPRQRDFLLAGNKRNPQ-------------AYRREVEERSQNIFSGFSTELLSEALGVS 243          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: GLYG2_SOYBN (Glycinin G2 OS=Glycine max GN=Gy2 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 8.120e-35
Identity = 79/206 (38.35%), Postives = 106/206 (51.46%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET-XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQL---XXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C IQ LNAL+P  ++ESE G  E W+ NN+  QCA VA+ R  + +  L  P+YTN P+  Y+ QG GI G++FPGC  T                   HQKV + REGD+IA+P G A W+YNN    +V V+++D  + +NQLDQ  R+FYL GN + +                           N+  GF    L EAF VN
Sbjct:   28 CQIQKLNALKPDNRIESEGGFIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQGNGIFGMIFPGCPSTYQEPQESQQRGRSQRPQDRHQKVHRFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQQQQGGSQSQKGKQQEEENEGSNILSGFAPEFLKEAFGVN 233          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: GLYG3_SOYBN (Glycinin G3 OS=Glycine max GN=GY3 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.385e-34
Identity = 71/160 (44.38%), Postives = 96/160 (60.00%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQ 627
            C IQ LNAL+P  ++ESE G  E W+ NN+  QCA VA+ R  + +  L  P+YTN P+  Y+ QG GI G++FPGC  T                  HQK+   REGD+IA+P G A+W+YNN    +V V+L+D  + QNQLDQ  R+FYL GN + +
Sbjct:   31 CQIQRLNALKPDNRIESEGGFIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNAPQEIYIQQGSGIFGMIFPGCPST--FEEPQQKGQSSRPQDRHQKIYHFREGDLIAVPTGFAYWMYNNEDTPVVAVSLIDTNSFQNQLDQMPRRFYLAGNQEQE 188          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: SSG1_AVESA (12S seed storage globulin 1 OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.173e-33
Identity = 75/210 (35.71%), Postives = 111/210 (52.86%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET--------XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C    L A EP ++V S+AG+TE++D+ NEQ +CA V+V R+ I+ +GLL+P Y N P + Y++QGRG  G+ FPGC  T                          HQ+V  +++GDV+ALPAG  HW YN+G   +V V + DV N+ NQL+   ++F L GN + +                        N+F GF  +LL+EA  ++
Sbjct:   45 CKFDRLQAFEPLRQVRSQAGITEYFDEQNEQFRCAGVSVIRRVIEPQGLLLPQYHNAPGLVYILQGRGFTGLTFPGCPATFQQQFQQFDQARFAQGQSKSQNLKDEHQRVHHIKQGDVVALPAGIVHWCYNDGDAPIVAVYVFDVNNNANQLEPRQKEFLLAGNNKRE-------------------QQFGQNIFSGFSVQLLSEALGIS 235          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: GLYG1_SOYBN (Glycinin G1 OS=Glycine max GN=GY1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.173e-33
Identity = 68/161 (42.24%), Postives = 97/161 (60.25%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET-XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQ 627
            C IQ LNAL+P  ++ESE G+ E W+ NN+  QCA VA+ R  + +  L  P+YTN P+  Y+ QG+GI G+++PGC  T                   HQK+   REGD+IA+P G A W+YNN    +V V+++D  + +NQLDQ  R+FYL GN + +
Sbjct:   31 CQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQE 191          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: GLUA3_ORYSJ (Glutelin type-A 3 OS=Oryza sativa subsp. japonica GN=GLUA3 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.173e-33
Identity = 80/210 (38.10%), Postives = 106/210 (50.48%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET--------XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C    L A EP + V S+AG TEF+D +NE  QC  V V R+ I+ RGLL+P Y+N   + YV+QGRGI G  FPGC ET                          HQK+ + ++GDV+ALPAG AHW YN+G   +V + + D+ NS NQLD   R F+L GN +                          N+F GF   LL+EA  ++
Sbjct:   45 CRFDRLQAFEPIRTVRSQAGTTEFFDVSNELFQCTGVFVVRRVIEPRGLLLPHYSNGATLVYVIQGRGITGPTFPGCPETYQQQFQQSEQDQQLEGQSQSHKFRDEHQKIHRFQQGDVVALPAGVAHWCYNDGDAPIVAIYVTDIYNSANQLDPRHRDFFLAGNNK-----------IGQQLYRYEARDNSKNVFGGFSVELLSEALGIS 243          
The following BLAST results are available for this feature:
BLAST of CX046766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
GLUB4_ORYSJ1.933e-3638.83Glutelin type-B 4 OS=Oryza sativa subsp. japonica ... [more]
GLUB1_ORYSJ3.297e-3639.32Glutelin type-B 1 OS=Oryza sativa subsp. japonica ... [more]
11S2_SESIN4.306e-3637.4411S globulin seed storage protein 2 OS=Sesamum ind... [more]
GLUA2_ORYSJ9.592e-3639.81Glutelin type-A 2 OS=Oryza sativa subsp. japonica ... [more]
GLUA1_ORYSJ2.791e-3539.81Glutelin type-A 1 OS=Oryza sativa subsp. japonica ... [more]
GLYG2_SOYBN8.120e-3538.35Glycinin G2 OS=Glycine max GN=Gy2 PE=1 SV=2[more]
GLYG3_SOYBN1.385e-3444.38Glycinin G3 OS=Glycine max GN=GY3 PE=3 SV=1[more]
SSG1_AVESA1.173e-3335.7112S seed storage globulin 1 OS=Avena sativa PE=2 S... [more]
GLYG1_SOYBN1.173e-3342.24Glycinin G1 OS=Glycine max GN=GY1 PE=1 SV=2[more]
GLUA3_ORYSJ1.173e-3338.10Glutelin type-A 3 OS=Oryza sativa subsp. japonica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A11-B21-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046766 ID=CX046766; Name=CX046766; organism=Citrus sinensis; type=EST; length=806bp
CTCAAAATGGCTTCTTCTTCTTTGCTCTGTTTTGGCCTTTGCCTTCTAGT
TCTCTTCAACGCCTGCTTTGCTCAAATAGAGCAGGTAACAGACATAACTA
GGGAAGGAAAGCAGCAAAGGCAACGGCAGCAACGCTTCCAAACCCAGTGC
AATATCCAGAACCTCAACGCCCTTGAGCCCCGACAGAAGGTCGAATCCGA
AGCTGGCGTCACAGAGTTCTGGGACCAGAACAATGAGCAATTACAGTGCG
CCAATGTTGCCGTATTTCGCCAACGTATCCAGCAGAGAGGGCTGCTCGTG
CCTGCGTACACCAACACTCCTGAGATTTTCTATGTTGTTCAAGGTAGAGG
CATTCATGGAGTTGTATTCCCCGGATGTGCTGAGACTTTCCAAGATTCAC
AACAACAGCAGTCGTTCCAGGGCAGTAAATCCCAAGATCAACACCAAAAG
GTCAGACAACTACGTGAGGGTGATGTCATTGCATTGCCTGCTGGAGCAGC
TCACTGGATTTACAACAATGGCCGGGACCAGCTTGTTTTGGTCGCCCTCG
TTGACGTTGGCAATTCTCAAAACCAGCTTGATCAGTACTTCAGGAAATTC
TACCTCGGTGGCAACCCACAACCACAACTCCAAGGTTTCAGTCAAAGTCA
AGGTGGCAGAAGTCAGGGAAGCCAAGGCAGCGACGACGGGAGAGGTGGCA
ATCTCTTTAGAGGCTTTGACGAGCGGTTGTTGGCTGAGGCCTTCAACGTG
AACCCAGATCTAATCAGGAGACTGCAGAGGCCACAGATACAGAGGGGCAT
TATCAT
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