CX046766

Overview
NameCX046766
Unique NameCX046766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046766_ssr11 microsatellite CX046766_ssr11:11..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: 12S2_ARATH (12S seed storage protein CRB OS=Arabidopsis thaliana GN=CRB PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.173e-33
Identity = 81/207 (39.13%), Postives = 107/207 (51.69%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET----XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYL-GGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C +  LNALEP Q ++SE G  E WD +  QL+C+  A  R  I+ +GL +P + N  ++ +VV GRG+ G V PGCAET                      HQKV  LR GD IA P+G A W YNNG + L+LVA  D+ ++QNQLD+  R F + G NPQ Q                        N+F GF   +LA+AF +N
Sbjct:   30 CQLDQLNALEPSQIIKSEGGRIEVWDHHAPQLRCSGFAFERFVIEPQGLFLPTFLNAGKLTFVVHGRGLMGRVIPGCAETFMESPVFGEGQGQGQSQGFRDMHQKVEHLRCGDTIATPSGVAQWFYNNGNEPLILVAAADLASNQNQLDRNLRPFLIAGNNPQGQ------------EWLQGRKQQKQNNIFNGFAPEILAQAFKIN 224          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: SSG2_AVESA (12S seed storage globulin 2 OS=Avena sativa PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.819e-33
Identity = 74/210 (35.24%), Postives = 110/210 (52.38%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET--------XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C    L A EP ++V S+AG+ E++D+ NEQ +CA V+V R+ I+ +GLL+P Y N P + Y++QGRG  G+ FPGC  T                          HQ+V  +++GDV+ALPAG  HW YN+G   +V V + DV N+ NQL+   ++F L GN + +                        N+F GF  +LL+EA  ++
Sbjct:   45 CRFDRLQAFEPLRQVRSQAGIIEYFDEQNEQFRCAGVSVIRRVIEPQGLLLPQYHNAPGLVYILQGRGFTGLTFPGCPATFQQQFQPFDQAQFAEGQSQSQNLKDEHQRVHHIKQGDVVALPAGIVHWCYNDGDAPIVAVYVFDVNNNANQLEPRQKEFLLAGNNKRE-------------------QQFGQNIFSGFSVQLLSEALGIS 235          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: GLYG5_SOYBN (Glycinin OS=Glycine max PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.211e-32
Identity = 75/214 (35.05%), Postives = 104/214 (48.60%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET----XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQ------PQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVNPD 759
            C + NLNALEP  +VESE G+ E W+  + +LQCA V V ++ + + G  +P+Y   P++  VVQG+G  G  FPGC ET                      HQK+R   EGDV+ +P G  +W YN G + +V ++ +D  N  NQLDQ  R FYL GNP        Q                        ++  GF +  LA++FN N D
Sbjct:   33 CQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGSHLPSYLPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPLGVPYWTYNTGDEPVVAISPLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHRQQEEEGGSVLSGFSKHFLAQSFNTNED 246          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: LEG_CICAR (Legumin OS=Cicer arietinum GN=leg3 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.434e-32
Identity = 74/203 (36.45%), Postives = 107/203 (52.71%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVP-AYTNTPEIFYVVQGRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C +++LNAL+P  +++SE G+ E W+ +N+Q  CA VA+ R  +Q   LL    +  +PEIF + QG G  G+VFPGC ET                  HQKV + REGD+IA+P G   W++N+    ++ V+L+D  + QNQLDQ  R+FYL GN + +                        N+F GF    L +A NVN
Sbjct:   31 CQLEHLNALKPDNRIKSEGGLIETWNPSNKQFACAGVALSRATLQPNSLLQTFLHQRSPEIF-IQQGNGYFGMVFPGCVETFEEPRESEQGEGSKFSDSHQKVNRFREGDIIAVPTGVVFWMFNDQDTPVIAVSLIDTSSFQNQLDQMPRRFYLAGNHEQEF-------LRYQQEGSEEEENEGGNIFSGFKRDFLEDALNVN 225          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: 12S1_ARATH (12S seed storage protein CRA1 OS=Arabidopsis thaliana GN=CRA1 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 6.434e-32
Identity = 76/208 (36.54%), Postives = 110/208 (52.88%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET-----XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYL-GGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C +  LNALEP   ++SEAG  E WD +  QL+C+ V+  R  I+ +GL +P++ NT ++ +V +GRG+ G V PGCAET                       HQKV  +R GD IA   G A W YN+G++ LV+V++ D+ + QNQLD+  R FYL G NPQ Q+                       N+F GF   ++A+A  ++
Sbjct:   36 CQLDQLNALEPSHVLKSEAGRIEVWDHHAPQLRCSGVSFARYIIESKGLYLPSFFNTAKLSFVAKGRGLMGKVIPGCAETFQDSSEFQPRFEGQGQSQRFRDMHQKVEHIRSGDTIATTPGVAQWFYNDGQEPLVIVSVFDLASHQNQLDRNPRPFYLAGNNPQGQV------------WLQGREQQPQKNIFNGFGPEVIAQALKID 231          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: 13S2_FAGES (13S globulin seed storage protein 2 OS=Fagopyrum esculentum GN=FA18 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.097e-31
Identity = 77/213 (36.15%), Postives = 101/213 (47.42%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET--------------XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAF 744
            C+IQ L A EP ++V SEAGVTE WD +  + +C      R  IQ  GLL+P+Y+N P I +V QGRG+ GVV PGC ET                                HQK+ ++REGDVI  PAG   W +N+G D L+ V L+D  +   QLD+  R F+L G  Q Q                        N+  GF + +L E F
Sbjct:   46 CDIQRLTASEPSRRVRSEAGVTEIWDHDTPEFRCTGFVAVRVVIQPGGLLLPSYSNAPYITFVEQGRGVQGVVIPGCPETFQSDSEFEYPQSQRGRHSRQSESEEESSRGDQHQKIFRIREGDVIPSPAGVVQWTHNDGNDDLISVTLLDANSYHKQLDENVRSFFLAG--QSQRETREEGSDRQSRESDDDEALLGANILSGFQDEILHELF 256          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: CRU4_BRANA (Cruciferin CRU4 OS=Brassica napus GN=CRU4 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.193e-31
Identity = 79/215 (36.74%), Postives = 104/215 (48.37%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXX------------HQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYL-GGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C +  LNALEP Q ++SE G  E WD +  QL+C+  A  R  I+ +GL +P + N  ++ +VV G  + G V PGCAET                              HQKV  LR GD IA P G A W YNNG + L+LVA  D+ N+ NQLD+  R F L G NPQ Q                        N+F GF  ++LA+AF ++
Sbjct:   29 CQLDQLNALEPSQIIKSEGGRIEVWDHHAPQLRCSGFAFERFVIEPQGLYLPTFLNAGKLTFVVHGHALMGKVTPGCAETFNDSPVFGQGQGQEQGQGQGQGQGQGFRDMHQKVEHLRSGDTIATPPGVAQWFYNNGNEPLILVAAADIANNLNQLDRNLRPFLLAGNNPQGQ------------QWLQGRQQQKQNNIFNGFAPQILAQAFKIS 231          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: GLYG4_SOYBN (Glycinin G4 OS=Glycine max GN=GY4 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.170e-31
Identity = 72/217 (33.18%), Postives = 103/217 (47.47%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET-----XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNP-------QPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVNPDL 762
            C + NLNALEP  +VESE G+ + W+  + +L+CA V V +  + + GL  P+Y+  P +  + QG+G  GV  PGC ET                       HQK+R   EGDV+ +P    +W YN G + +V ++L+D  N  NQLDQ  R FYL GNP         Q                        ++  GF +  LA++FN N D+
Sbjct:   32 CQLNNLNALEPDHRVESEGGLIQTWNSQHPELKCAGVTVSKLTLNRNGLHSPSYSPYPRMIIIAQGKGALGVAIPGCPETFEEPQEQSNRRGSRSQKQQLQDSHQKIRHFNEGDVLVIPPSVPYWTYNTGDEPVVAISLLDTSNFNNQLDQTPRVFYLAGNPDIEYPETMQQQQQQKSHGGRKQGQHQQEEEEEGGSVLSGFSKHFLAQSFNTNEDI 248          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: AHY3_ARAHY (Arachin Ahy-3 OS=Arachis hypogaea PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.256e-27
Identity = 70/220 (31.82%), Postives = 100/220 (45.45%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET------------XXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQL---XXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVNPDL 762
            C  Q LNA  P   +ESE G  E W+ NN++ QCA VA+ R  +++  L  P Y+N P+  ++ QG G  G++FPGC  T                              HQKV   REGD+IA+P G A WIYN+    +V ++++   +  NQLDQ+ R+F L G  + +                           N+F GF    L+  F VN D+
Sbjct:   32 CQFQRLNAQRPDNCIESEGGYIETWNPNNQEFQCAGVALSRFVLRRNALRRPFYSNAPQEIFIYQGSGYFGLIFPGCPGTFEEPIQGSEQFQRPSRHFQGQDQSQRPLDTHQKVHGFREGDLIAVPHGVAFWIYNDQDTDVVAISVLHTNSLHNQLDQFPRRFNLAGKQEQEFLRYQQRSGRQSPKGEEQEQEQENEGGNVFSGFSTEFLSHGFQVNEDI 251          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: 11S3_HELAN (11S globulin seed storage protein G3 OS=Helianthus annuus GN=HAG3 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.833e-25
Identity = 70/220 (31.82%), Postives = 104/220 (47.27%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXXHQ--------KVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXX--------NLFRGFDERLLAEAFNVNPD 759
            C +QN+ ALEP + +++EAGVTE WD  ++Q QCA   +F       G  + A++  P    +       GV+ PGC  T                   +        K+  L+EGDV+A+P G AHW++N+G  +LV+V L D  N +NQLD+  R+F+L GNPQ Q                                N+F GF   L+A++FNV+ +
Sbjct:   32 CQLQNIEALEPIEVIQAEAGVTEIWDAYDQQFQCAWSILF-----DTGFNLVAFSCLPTSTPLFWPSSREGVILPGCRRTYEYSQEQQFSGEGGRRGGGEGTFRTVIRKLENLKEGDVVAIPTGTAHWLHNDGNTELVVVFL-DTQNHENQLDENQRRFFLAGNPQAQAQSQQQQQRQPRQQSPQRQRQRQRQGQGQNAGNIFNGFTPELIAQSFNVDQE 245          
The following BLAST results are available for this feature:
BLAST of CX046766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
12S2_ARATH1.173e-3339.1312S seed storage protein CRB OS=Arabidopsis thalia... [more]
SSG2_AVESA5.819e-3335.2412S seed storage globulin 2 OS=Avena sativa PE=3 S... [more]
GLYG5_SOYBN2.211e-3235.05Glycinin OS=Glycine max PE=1 SV=1[more]
LEG_CICAR6.434e-3236.45Legumin OS=Cicer arietinum GN=leg3 PE=1 SV=1[more]
12S1_ARATH6.434e-3236.5412S seed storage protein CRA1 OS=Arabidopsis thali... [more]
13S2_FAGES1.097e-3136.1513S globulin seed storage protein 2 OS=Fagopyrum e... [more]
CRU4_BRANA3.193e-3136.74Cruciferin CRU4 OS=Brassica napus GN=CRU4 PE=1 SV=... [more]
GLYG4_SOYBN4.170e-3133.18Glycinin G4 OS=Glycine max GN=GY4 PE=1 SV=1[more]
AHY3_ARAHY1.256e-2731.82Arachin Ahy-3 OS=Arachis hypogaea PE=1 SV=1[more]
11S3_HELAN5.833e-2531.8211S globulin seed storage protein G3 OS=Helianthus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A11-B21-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046766 ID=CX046766; Name=CX046766; organism=Citrus sinensis; type=EST; length=806bp
CTCAAAATGGCTTCTTCTTCTTTGCTCTGTTTTGGCCTTTGCCTTCTAGT
TCTCTTCAACGCCTGCTTTGCTCAAATAGAGCAGGTAACAGACATAACTA
GGGAAGGAAAGCAGCAAAGGCAACGGCAGCAACGCTTCCAAACCCAGTGC
AATATCCAGAACCTCAACGCCCTTGAGCCCCGACAGAAGGTCGAATCCGA
AGCTGGCGTCACAGAGTTCTGGGACCAGAACAATGAGCAATTACAGTGCG
CCAATGTTGCCGTATTTCGCCAACGTATCCAGCAGAGAGGGCTGCTCGTG
CCTGCGTACACCAACACTCCTGAGATTTTCTATGTTGTTCAAGGTAGAGG
CATTCATGGAGTTGTATTCCCCGGATGTGCTGAGACTTTCCAAGATTCAC
AACAACAGCAGTCGTTCCAGGGCAGTAAATCCCAAGATCAACACCAAAAG
GTCAGACAACTACGTGAGGGTGATGTCATTGCATTGCCTGCTGGAGCAGC
TCACTGGATTTACAACAATGGCCGGGACCAGCTTGTTTTGGTCGCCCTCG
TTGACGTTGGCAATTCTCAAAACCAGCTTGATCAGTACTTCAGGAAATTC
TACCTCGGTGGCAACCCACAACCACAACTCCAAGGTTTCAGTCAAAGTCA
AGGTGGCAGAAGTCAGGGAAGCCAAGGCAGCGACGACGGGAGAGGTGGCA
ATCTCTTTAGAGGCTTTGACGAGCGGTTGTTGGCTGAGGCCTTCAACGTG
AACCCAGATCTAATCAGGAGACTGCAGAGGCCACAGATACAGAGGGGCAT
TATCAT
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