CX046766

Overview
NameCX046766
Unique NameCX046766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046766_ssr11 microsatellite CX046766_ssr11:11..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: CRU1_BRANA (Cruciferin BnC1 OS=Brassica napus GN=BnC1 PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.459e-23
Identity = 72/241 (29.88%), Postives = 107/241 (44.40%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET-----------XXXXXXXXXXXXXXXXXXHQKVRQLREG---------------------------DVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYL-GGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C +  LNALEP   +++EAG  E WD +  QL+C+ V+  R  I+ +GL +P++ +T ++ +V +G G+ G V PGCAET                             HQ   Q ++G                           D IA   G A W YN+G   LV+V+++D+ + QNQLD+  R FYL G NPQ Q+                       N+  GF   +LA+AF ++
Sbjct:   30 CQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPSGGSPSGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQV------------WIEGREQQPQKNILNGFTPEVLAKAFKID 258          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: CRUA_BRANA (Cruciferin OS=Brassica napus GN=CRUA PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.074e-22
Identity = 69/240 (28.75%), Postives = 103/240 (42.92%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVF-------------------------------------PGCAETXXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYL-GGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C +  LNALEP   +++EAG  E WD +  QL+C+ V+  R  I+ +GL +P++ +T  + +V +G G+ G V                                       G  +                   HQKV  +R GD IA   G A W YN+G   LV+V+++D+ + QNQLD+  R FYL G NPQ Q+                       N+  GF   +LA+AF ++
Sbjct:   30 CQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTARLSFVAKGEGLMGRVVLCAETFQDSSVFQPSGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQV------------WIEGREQQPQKNILNGFTPEVLAKAFKID 257          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: CRU3_BRANA (Cruciferin CRU1 OS=Brassica napus GN=CRU1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.259e-19
Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 387
            CN+ NL+ L+P + ++SEAG  E+WD NN Q++CA V+V R  I+Q GL +P + ++P+I YVVQG GI G V PGCAET
Sbjct:   37 CNLDNLDVLQPTETIKSEAGRVEYWDHNNPQIRCAGVSVSRVIIEQGGLYLPTFFSSPKISYVVQGMGISGRVVPGCAET 116          

HSP 2 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  442 HQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGGNPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            HQKV  +R GD+IA+ AG++HWIYN G   LV++ L+D+ N QNQLD+  R F L GN  PQ                        N+  GFD ++LA+A  ++
Sbjct:  177 HQKVEHVRHGDIIAITAGSSHWIYNTGDQPLVIICLLDIANYQNQLDRNPRTFRLAGN-NPQ-------------GGSQQQQQQQQNMLSGFDPQVLAQALKID 266          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: 13S3_FAGES (13S globulin seed storage protein 3 OS=Fagopyrum esculentum GN=FAGAG1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.391e-18
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 387
            C+IQ L A EP ++V SEAGVTE WD +  + +CA     R  IQ  GLL+P+Y+N P I +V QGRG+ GVV PGC ET
Sbjct:   44 CDIQRLTASEPSRRVRSEAGVTEIWDHDTPEFRCAGFVAVRVVIQPGGLLLPSYSNAPYITFVEQGRGVQGVVVPGCPET 123          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: 13S1_FAGES (13S globulin seed storage protein 1 OS=Fagopyrum esculentum GN=FA02 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.817e-18
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 387
            C++Q L A EP ++V SEAGVTE WD +  + +CA     R  IQ  GLL+P+Y+N P I +V QGRG+ GVV PGC ET
Sbjct:   44 CDVQRLTASEPSRRVRSEAGVTEIWDNDTPEFRCAGFVAVRVVIQPGGLLLPSYSNAPYITFVEQGRGVQGVVVPGCPET 123          
BLAST of CX046766 vs. ExPASy Swiss-Prot
Match: CRU2_BRANA (Cruciferin BnC2 OS=Brassica napus GN=BnC2 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.440e-15
Identity = 70/248 (28.23%), Postives = 95/248 (38.31%), Query Frame = 1
Query:  148 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQC-----------------------ANVAVFRQRIQQRGLLVPAYTNTPEIFYVVQ----------------------GRGIHGVVFPGCAETXXXXXXXXXXXXXXXXXXHQKVRQLREGDVIALPAGAAHWIYNNGRDQLVLVALVDVGNSQNQLDQYFRKFYLGG-NPQPQLXXXXXXXXXXXXXXXXXXXXXXXNLFRGFDERLLAEAFNVN 753
            C +  LNALEP   +++EAG  E WD +  QL+C                       ANV+   +     G +VP    T +   V Q                      G+G  G    G  +                   HQKV  +R GD IA   G A W YNNG   LV+VA++D+ + QNQLD+   +FYL G NPQ Q                        N+  GF   +LA+AF ++
Sbjct:   30 CQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESQGLYLPSFLNTANVSFVAKGQGLMGRVVPGCAETFQDSSVFQPGSGSPFGEGQGQGQQGQGQGQGQG-QGKGQQGQGKGQQGQSQGQQGQGQGFRDMHQKVEHIRSGDTIATHPGVAQWFYNNGNQPLVIVAVMDLASHQNQLDRNPSQFYLAGKNPQGQ------------SWLHGRGQQPQNNILNGFSPEVLAQAFKID 264          
The following BLAST results are available for this feature:
BLAST of CX046766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CRU1_BRANA5.459e-2329.88Cruciferin BnC1 OS=Brassica napus GN=BnC1 PE=3 SV=... [more]
CRUA_BRANA2.074e-2228.75Cruciferin OS=Brassica napus GN=CRUA PE=1 SV=1[more]
CRU3_BRANA1.259e-1953.75Cruciferin CRU1 OS=Brassica napus GN=CRU1 PE=3 SV=... [more]
13S3_FAGES1.391e-1853.7513S globulin seed storage protein 3 OS=Fagopyrum e... [more]
13S1_FAGES1.817e-1852.5013S globulin seed storage protein 1 OS=Fagopyrum e... [more]
CRU2_BRANA1.440e-1528.23Cruciferin BnC2 OS=Brassica napus GN=BnC2 PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A11-B21-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046766 ID=CX046766; Name=CX046766; organism=Citrus sinensis; type=EST; length=806bp
CTCAAAATGGCTTCTTCTTCTTTGCTCTGTTTTGGCCTTTGCCTTCTAGT
TCTCTTCAACGCCTGCTTTGCTCAAATAGAGCAGGTAACAGACATAACTA
GGGAAGGAAAGCAGCAAAGGCAACGGCAGCAACGCTTCCAAACCCAGTGC
AATATCCAGAACCTCAACGCCCTTGAGCCCCGACAGAAGGTCGAATCCGA
AGCTGGCGTCACAGAGTTCTGGGACCAGAACAATGAGCAATTACAGTGCG
CCAATGTTGCCGTATTTCGCCAACGTATCCAGCAGAGAGGGCTGCTCGTG
CCTGCGTACACCAACACTCCTGAGATTTTCTATGTTGTTCAAGGTAGAGG
CATTCATGGAGTTGTATTCCCCGGATGTGCTGAGACTTTCCAAGATTCAC
AACAACAGCAGTCGTTCCAGGGCAGTAAATCCCAAGATCAACACCAAAAG
GTCAGACAACTACGTGAGGGTGATGTCATTGCATTGCCTGCTGGAGCAGC
TCACTGGATTTACAACAATGGCCGGGACCAGCTTGTTTTGGTCGCCCTCG
TTGACGTTGGCAATTCTCAAAACCAGCTTGATCAGTACTTCAGGAAATTC
TACCTCGGTGGCAACCCACAACCACAACTCCAAGGTTTCAGTCAAAGTCA
AGGTGGCAGAAGTCAGGGAAGCCAAGGCAGCGACGACGGGAGAGGTGGCA
ATCTCTTTAGAGGCTTTGACGAGCGGTTGTTGGCTGAGGCCTTCAACGTG
AACCCAGATCTAATCAGGAGACTGCAGAGGCCACAGATACAGAGGGGCAT
TATCAT
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