CX046761
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 2.126e-36 Identity = 80/177 (45.20%), Postives = 104/177 (58.76%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSE--GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD--LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705 T+W+GDL WMD TF+ ++ + VNVKV+R+K + Y FV+F S AAAE+ L Y+ +++P F+LNWAT G D SIFVGDL P DS L TF S YPS AK+I+D TG ++ YGFVRF E E+ A+ M G C RP+RI VA+PK Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 2.776e-36 Identity = 79/191 (41.36%), Postives = 116/191 (60.73%), Query Frame = 1 Query: 148 NGSNNNFTNDET----KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSG-SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705 N SN + DE T+W+G+L W+ E F+ ++ G+ V VK+IRN+ TG + GY FVEF S A + S + +P T+ F+LNWA+ G ++ S+ SIFVGDL+P+V + + F+S+Y S K AK++ D T ++GYGFVRF DEN++ A+ EM G C RP+R+ +ATPK Sbjct: 77 NTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.599e-34 Identity = 81/177 (45.76%), Postives = 114/177 (64.41%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 705 ++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L +G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F YPS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V S+P+R+ VA PK Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 3.394e-34 Identity = 80/177 (45.20%), Postives = 114/177 (64.41%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 705 ++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L +G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F YPS +G KV++D TG +KGYGFV+F DE E+ RA+TE G + S+P+R+ VA PK Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPK 176
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 7.561e-34 Identity = 80/177 (45.20%), Postives = 113/177 (63.84%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 705 ++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L +G +P + F+LN+ T+ ++ + + S+FVGDL PDV D +L E F YPS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V S+P+R+ VA PK Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 9.875e-34 Identity = 80/177 (45.20%), Postives = 113/177 (63.84%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 705 ++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L +G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F YPS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V +P+R+ VA PK Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 1.290e-33 Identity = 80/177 (45.20%), Postives = 113/177 (63.84%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPK 705 ++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L +G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F YPS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V +P+R+ VA PK Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 1.022e-30 Identity = 73/177 (41.24%), Postives = 109/177 (61.58%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP--FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE-MNGVYCSSRPMRIDVATPK 705 ++W+GDL +MDE F+ FS G+ VK+I ++ TG S GY FVE A+ ++ +Q +G L+P ++ P F+LN+AT+ +R E + S+FVGDL +V D L + F K+PS KGAKV+ D G ++GYGFV+F DENE+ +A+ E N +P+RI +A K Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDP-YGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNK 179
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.747e-22 Identity = 61/175 (34.86%), Postives = 101/175 (57.71%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPMRIDVATPK 705 ++W+G+L +MDE F+ F+ G+ VV +++IR+K TG++ GYGFVE A E+ L+ +G +P P R + S ++ E+ S S+FV DL PDV D +L E F + S K+++D+N G +K GFV F E E+ RA+ ++ G + +R+ +A+ + Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSR-SNYGKQGES-STFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 1.132e-21 Identity = 65/196 (33.16%), Postives = 110/196 (56.12%), Query Frame = 1 Query: 151 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQ----------SEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQPFRLNWATFSGSD-----RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687 G++N +++GDL D+ + ++ G+ +NV+++ N ++GY FV+F S A L +G L+PN ++ +LNWAT S S+ ++ ++ SIFVGDLAP+VT+S L E F ++Y S AK++ D TG +KGYGFV+F + +E+ A++EM GV+ + R +++ Sbjct: 43 GASNVSLGTTGNQLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKV 237 The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bpback to top |