CX046761
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21 Identity = 60/203 (29.56%), Postives = 104/203 (51.23%), Query Frame = 1 Query: 175 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGAR 783 ++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+ ++ + ++ +P R+N A+ + A +IF+G+L P++ + +L +TFS+ ++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K + G L+ A P S R Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADR 206
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21 Identity = 60/203 (29.56%), Postives = 104/203 (51.23%), Query Frame = 1 Query: 175 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGAR 783 ++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+ ++ + ++ +P R+N A+ + A +IF+G+L P++ + +L +TFS+ ++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K + G L+ A P S R Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADR 206
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21 Identity = 60/203 (29.56%), Postives = 104/203 (51.23%), Query Frame = 1 Query: 175 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGAR 783 ++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+ ++ + ++ +P R+N A+ + A +IF+G+L P++ + +L +TFS+ ++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K + G L+ A P S R Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADR 206
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 1.060e-19 Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 1 Query: 310 GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP-------------FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705 GY FVEF ++ A+ L S + + +PN P FRLNWA+ + + + S+FVGDL+P T++ L F +++ SVK +V+ D TG ++ +GFVRFGDE+ER RA+ EM+G + R +R+ ATP+ Sbjct: 129 GYCFVEFETQKDAKFAL-SLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPR 272
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.816e-18 Identity = 53/193 (27.46%), Postives = 104/193 (53.89%), Query Frame = 1 Query: 154 SNNNFTNDETK---TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL------SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705 SN N+ET+ TI++G L +D+ +L F H G V+ +VI + T +S GYG+V+F +++ AEK +Q G + ++ + +G++ R + D ++F+G+L+ + + E F +K+ V ++ T + KG+G+V+F + + +A+ + G Y +RP+R+D ++P+ Sbjct: 155 SNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELF-AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 346
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.097e-16 Identity = 51/176 (28.98%), Postives = 94/176 (53.41%), Query Frame = 1 Query: 178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705 + +T+++G+L + E + FS G + K+I + ++ Y FVEFY A L + +G + + ++NWAT S ++ + + +FVGDL+P++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G + R +R + AT K Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176 HSP 2 Score: 69.3218 bits (168), Expect = 3.091e-11 Identity = 44/173 (25.43%), Postives = 85/173 (49.13%), Query Frame = 1 Query: 190 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT------FSGSDRRTE-----------ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657 +++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE + G + + R NWAT S + T+ + + +++ G +A +TD ++++TF S + + +V + KGY FVRF + A+ +NG Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG--RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 262
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.871e-16 Identity = 54/184 (29.35%), Postives = 96/184 (52.17%), Query Frame = 1 Query: 184 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----------SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705 KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A L + +G + + ++NWAT S ++ + S + +FVGDL+P++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +R + AT K Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185 HSP 2 Score: 67.781 bits (164), Expect = 8.994e-11 Identity = 44/173 (25.43%), Postives = 84/173 (48.55%), Query Frame = 1 Query: 190 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT------FSGSDRRTEACS-----------DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657 +++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q G + + R NWAT S + T+ S + +++ G + +T+ ++++TF S + + +V D KGY FVRF + A+ +NG Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNG 271
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 86.6557 bits (213), Expect = 1.871e-16 Identity = 54/184 (29.35%), Postives = 96/184 (52.17%), Query Frame = 1 Query: 184 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----------SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705 KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A L + +G + + ++NWAT S ++ + S + +FVGDL+P++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +R + AT K Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185 HSP 2 Score: 68.1662 bits (165), Expect = 6.886e-11 Identity = 42/173 (24.28%), Postives = 85/173 (49.13%), Query Frame = 1 Query: 190 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA---------TFSGSDRR--------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657 +++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q G + + R NWA T+ + ++ + S+ +++ G + +T+ ++++TF S + + +V D KGY FVRF + A+ +NG Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 3.191e-16 Identity = 52/174 (29.89%), Postives = 91/174 (52.30%), Query Frame = 1 Query: 184 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705 + +++G+L + E L F G + N+K++ +K ++ Y FVE++ A LQ+ +G + N ++NWA S +++ + ++FVGDL +V D L+ F +PS V+ D TG ++GYGFV F +++ AM M G + RP+RI+ A + Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHDANIALQTLNGKQIENNI--VKINWAFQS---QQSSSDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 3.191e-16 Identity = 57/195 (29.23%), Postives = 103/195 (52.82%), Query Frame = 1 Query: 172 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL-----QSYSGSLM--------PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 717 ++ET T+++G L +D+ +L F G +V +VI + Q+G+S+GYG+V+F + AA+ + + G ++ P QP+ A G D+ +E ++FVG+L+ + T+ L F ++ ++ D +GR KG+G+V F D + + + EMNG + + RP R+D +TP+ G Sbjct: 259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFG-DQLSEPSD--TVFVGNLSFNATEDDLSTAFGG-CGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRPCRLDFSTPRTGGG 448 The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bpback to top |