CX046761

Overview
NameCX046761
Unique NameCX046761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046761_ssr60 microsatellite CX046761_ssr60:60..71. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046761_ssr104 microsatellite CX046761_ssr104:104..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10148 contig Csv1_Contig10148:379..1233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 60/203 (29.56%), Postives = 104/203 (51.23%), Query Frame = 1
Query:  175 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGAR 783
            ++  T+++G L   + E  L   F   G VVN  + +++ TGQ +GYGFVEF S   A+  ++  +  ++    +P R+N A+    +    A    +IF+G+L P++ + +L +TFS+    ++  K++ D +TG +KGY F+ F   +    A+  MNG Y  +RP+ +  A  K + G         L+ A  P S   R
Sbjct:   10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADR 206          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 60/203 (29.56%), Postives = 104/203 (51.23%), Query Frame = 1
Query:  175 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGAR 783
            ++  T+++G L   + E  L   F   G VVN  + +++ TGQ +GYGFVEF S   A+  ++  +  ++    +P R+N A+    +    A    +IF+G+L P++ + +L +TFS+    ++  K++ D +TG +KGY F+ F   +    A+  MNG Y  +RP+ +  A  K + G         L+ A  P S   R
Sbjct:   10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADR 206          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 60/203 (29.56%), Postives = 104/203 (51.23%), Query Frame = 1
Query:  175 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGAR 783
            ++  T+++G L   + E  L   F   G VVN  + +++ TGQ +GYGFVEF S   A+  ++  +  ++    +P R+N A+    +    A    +IF+G+L P++ + +L +TFS+    ++  K++ D +TG +KGY F+ F   +    A+  MNG Y  +RP+ +  A  K + G         L+ A  P S   R
Sbjct:   10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADR 206          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.060e-19
Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 1
Query:  310 GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP-------------FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705
            GY FVEF ++  A+  L S + + +PN   P             FRLNWA+ +       +  + S+FVGDL+P  T++ L   F +++ SVK  +V+ D  TG ++ +GFVRFGDE+ER RA+ EM+G +   R +R+  ATP+
Sbjct:  129 GYCFVEFETQKDAKFAL-SLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPR 272          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.816e-18
Identity = 53/193 (27.46%), Postives = 104/193 (53.89%), Query Frame = 1
Query:  154 SNNNFTNDETK---TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL------SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705
            SN    N+ET+   TI++G L   +D+ +L   F H G V+  +VI  + T +S GYG+V+F +++ AEK +Q   G  +        ++ +  +G++ R +   D       ++F+G+L+ +     + E F +K+  V   ++     T + KG+G+V+F +  +  +A+  + G Y  +RP+R+D ++P+
Sbjct:  155 SNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELF-AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 346          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.097e-16
Identity = 51/176 (28.98%), Postives = 94/176 (53.41%), Query Frame = 1
Query:  178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705
            + +T+++G+L   + E  +   FS  G   + K+I    +  ++ Y FVEFY    A   L + +G  +   +   ++NWAT   S ++ +  +   +FVGDL+P++T   ++  F+  +  +  A+V+ D  TG++KGYGFV F ++ +   A+  M G +   R +R + AT K
Sbjct:    7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176          

HSP 2 Score: 69.3218 bits (168), Expect = 3.091e-11
Identity = 44/173 (25.43%), Postives = 85/173 (49.13%), Query Frame = 1
Query:  190 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT------FSGSDRRTE-----------ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657
            +++GDL   +    + + F+  G++ + +V+++  TG+S+GYGFV FY++  AE  +    G  +    +  R NWAT       S  +  T+           +  + +++ G +A  +TD ++++TF S +  +   +V  +      KGY FVRF      + A+  +NG
Sbjct:   99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG--RQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 262          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.871e-16
Identity = 54/184 (29.35%), Postives = 96/184 (52.17%), Query Frame = 1
Query:  184 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----------SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705
            KT+++G+L   + E  +   FS  G   N K+I +  T  ++ Y FVEF+    A   L + +G  +   +   ++NWAT   S ++  + S +           +FVGDL+P++T   ++  F+  +  +  A+V+ D  TG++KGYGFV F ++ +   A+ +M G +   R +R + AT K
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185          

HSP 2 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 44/173 (25.43%), Postives = 84/173 (48.55%), Query Frame = 1
Query:  190 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT------FSGSDRRTEACS-----------DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657
            +++GDL   +    +   F+  G++ + +V+++  TG+S+GYGFV F+++  AE  +Q   G  +    +  R NWAT       S  +  T+  S           + +++ G +   +T+ ++++TF S +  +   +V  D      KGY FVRF      + A+  +NG
Sbjct:  108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNG 271          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.871e-16
Identity = 54/184 (29.35%), Postives = 96/184 (52.17%), Query Frame = 1
Query:  184 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----------SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705
            KT+++G+L   + E  +   FS  G   N K+I +  T  ++ Y FVEF+    A   L + +G  +   +   ++NWAT   S ++  + S +           +FVGDL+P++T   ++  F+  +  +  A+V+ D  TG++KGYGFV F ++ +   A+ +M G +   R +R + AT K
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185          

HSP 2 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 42/173 (24.28%), Postives = 85/173 (49.13%), Query Frame = 1
Query:  190 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA---------TFSGSDRR--------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657
            +++GDL   +    +   F+  G++ + +V+++  TG+S+GYGFV F+++  AE  +Q   G  +    +  R NWA         T+  + ++          + S+ +++ G +   +T+ ++++TF S +  +   +V  D      KGY FVRF      + A+  +NG
Sbjct:  108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 3.191e-16
Identity = 52/174 (29.89%), Postives = 91/174 (52.30%), Query Frame = 1
Query:  184 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705
            + +++G+L   + E  L   F   G + N+K++ +K   ++  Y FVE++    A   LQ+ +G  + N     ++NWA  S   +++ +    ++FVGDL  +V D  L+  F   +PS     V+ D  TG ++GYGFV F  +++   AM  M G   + RP+RI+ A  +
Sbjct:   75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHDANIALQTLNGKQIENNI--VKINWAFQS---QQSSSDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.191e-16
Identity = 57/195 (29.23%), Postives = 103/195 (52.82%), Query Frame = 1
Query:  172 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL-----QSYSGSLM--------PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 717
            ++ET T+++G L   +D+ +L   F   G +V  +VI + Q+G+S+GYG+V+F +  AA+  +     +   G ++        P   QP+    A   G D+ +E     ++FVG+L+ + T+  L   F      ++  ++  D  +GR KG+G+V F D +   + + EMNG + + RP R+D +TP+   G
Sbjct:  259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFG-DQLSEPSD--TVFVGNLSFNATEDDLSTAFGG-CGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRPCRLDFSTPRTGGG 448          
The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
SF3B4_RAT7.340e-2129.56Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE7.340e-2129.56Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]
SF3B4_HUMAN7.340e-2129.56Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
NGR1_YEAST1.060e-1937.93Negative growth regulatory protein NGR1 OS=Sacchar... [more]
NSR1_YEAST5.816e-1827.46Nuclear localization sequence-binding protein OS=S... [more]
TIAR_HUMAN1.097e-1628.98Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
TIA1_MOUSE1.871e-1629.35Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN1.871e-1629.35Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
PUB1_YEAST3.191e-1629.89Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
GAR2_SCHPO3.191e-1629.23Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A08-B15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bp
GCGATGGCCATGATGCAACAGCAGCAGATGATGATGTATCCTCATCATTA
CATGCCGTACGGCGGCGGCGGTCACCCGTATTATCAGAACGGCGGCGGCG
TAAAGCAGCAGCAGCAGCAGCAACATGGATTGAGTAACGGAAAACAAAAC
GGATCTAATAATAATTTTACTAATGACGAGACTAAGACTATATGGATTGG
TGATTTGTTTCATTGGATGGACGAAACTTTTCTTCATAATTGTTTCTCAC
ATACTGGTCAGGTTGTAAATGTTAAAGTTATCCGCAATAAGCAAACTGGT
CAGTCAGAAGGGTATGGATTTGTTGAGTTCTATTCACGTGCTGCAGCTGA
GAAAGTTTTGCAGAGCTATAGTGGTTCTCTAATGCCAAATACTGACCAGC
CTTTCCGACTTAATTGGGCGACCTTTAGCGGCAGTGATAGACGAACAGAA
GCATGTTCTGATCTGTCTATATTTGTAGGAGATTTGGCTCCAGATGTAAC
TGATAGTATATTGCAGGAGACCTTTTCTAGTAAGTATCCATCTGTAAAAG
GAGCCAAAGTTATCATCGACTCGAATACTGGCCGTACAAAAGGTTACGGT
TTTGTTAGATTTGGTGATGAAAATGAGAGGTCAAGGGCCATGACCGAAAT
GAATGGTGTGTATTGTTCAAGTAGGCCGATGCGCATAGATGTTGCAACCC
CCAAAAAGGCTTCTGGATATCAACAACAGTATTCTTCACAAGCTCTTGTA
TTGGCTGGTGGACCTGGGTCAAATGGTGCTAGGGTCCAAGGTTCTCAATC
TGATGGCGAGTCCATAATGCGACTATATTTGTTGGGGCACTTGATTCTGA
TGTCA
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