CX046761
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12 Identity = 46/188 (24.47%), Postives = 94/188 (50.00%), Query Frame = 1 Query: 160 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL----QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705 +N T +E +T++ L + L FS G+V +V++I ++ + +S G +VEF ++ + Q G + N A ++ + + + ++VG L ++T+ +L+ F + ++ ++++DS TGR+KGYGF+ F D +A+ ++NG + RPM++ T + Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12 Identity = 46/188 (24.47%), Postives = 95/188 (50.53%), Query Frame = 1 Query: 160 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL----QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705 +N T +E +T++ L + L FS G+V +V++I ++ + +S+G +VEF ++ + Q G + N A ++ + + + ++VG L ++T+ +L+ F + ++ ++++DS TGR+KGYGF+ F D +A+ ++NG + RPM++ T + Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12 Identity = 52/206 (25.24%), Postives = 97/206 (47.09%), Query Frame = 1 Query: 148 NGSNNNFTNDETK-------------------TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 NGSN N D T ++++G+L + E L FS GQV +++V R+ T +S GY +V + + A E+ L+ + +L+ +P R+ W+ + R+T ++F+ +L + + L +TF++ + ++ KV D G +KGYGFV + A+ +NG+ + + + + KK Sbjct: 24 NGSNANVAADTTAGEASQTTSSTTPTAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--RPCRIMWSQRDPALRKT---GQGNVFIKNLDTAIDNKALHDTFAA-FGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKK 222
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NUCL_MESAU (Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11 Identity = 63/211 (29.86%), Postives = 96/211 (45.50%), Query Frame = 1 Query: 160 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQG 792 N+ + E+KT+ + +L + E L F + +KV +N+Q G+S+GY F+EF S A++ L S + M + RL GS S ++FV L+ D T+ L+E+F SV+ A+++ D TG +KG+GFV F E + A M + +D A PK G GG G G R G Sbjct: 478 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQQ-GKSKGYAFIEFASFEDAKEALNSCNK--MEIEGRTIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEETLKESFEG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGR--------GGGRGGFGGRGGG 669
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11 Identity = 54/203 (26.60%), Postives = 99/203 (48.77%), Query Frame = 1 Query: 217 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPMRIDVAT---PKKA---SGXXXXXXXXALVLAGGPGSNGARVQGSQS 801 M + L+ F G + +++++ +TG S GY FV+F S A+ +++ +G + N + ++++A G E+ D +++V +L +TD L++ F KY ++ ++ D TGR +G FVRF E A++ +N V +S+P+ + +A KA A + A GPG N +G Q+ Sbjct: 113 MTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRN--KRLKVSYARPGG-----ESIKDTNLYVTNLPRTITDDELEKIFG-KYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAEEHGKMKAHHFMNQLGMGPPAAPIPAAGPGYNNMVHRGRQN 307
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11 Identity = 45/168 (26.79%), Postives = 82/168 (48.81%), Query Frame = 1 Query: 160 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS--DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657 N T+D + + L M + + F G + + K++R+K TGQS GYGFV + A+K + + +G +L T S R + S D +++V L ++ +++ F S+Y + +++++D TG ++G GF+RF E A+ +NG Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG---------LKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11 Identity = 45/168 (26.79%), Postives = 82/168 (48.81%), Query Frame = 1 Query: 160 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS--DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657 N T+D + + L M + + F G + + K++R+K TGQS GYGFV + A+K + + +G +L T S R + S D +++V L ++ +++ F S+Y + +++++D TG ++G GF+RF E A+ +NG Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG---------LKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.367e-11 Identity = 44/162 (27.16%), Postives = 86/162 (53.09%), Query Frame = 1 Query: 217 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPMRIDVA 696 M + L+ F G + +++++ +TG S GY FV+F S A+ ++S +G + N + ++++A G E+ D +++V +L +TD L++ F KY ++ ++ D TG+ +G FVRF E A++ +N V +S+P+ + +A Sbjct: 96 MTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRN--KRLKVSYARPGG-----ESIKDTNLYVTNLPRTITDDELEKIF-GKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLA 249
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.367e-11 Identity = 45/174 (25.86%), Postives = 90/174 (51.72%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 ++++G+L + E L+ FS GQV +++V R+ T +S GY +V + A E+ L + +L+ +P R+ W+ + R+T ++F+ +L + + L +TF++ + ++ KV D G +KGYGFV + + A+ +NG+ + + + + KK Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDSAIDNKALHDTFAA-FGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 209
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.091e-11 Identity = 42/149 (28.19%), Postives = 75/149 (50.34%), Query Frame = 1 Query: 217 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657 M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G RL T S R +E+ D ++++ L +T +++ F + + ++V++D TG ++G F+RF +E A+ NG Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNG---------LRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMF-LPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169 The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bpback to top |