CX046761

Overview
NameCX046761
Unique NameCX046761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 46/188 (24.47%), Postives = 94/188 (50.00%), Query Frame = 1
Query:  160 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL----QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705
            +N T +E   +T++   L   +    L   FS  G+V +V++I ++ + +S G  +VEF   ++    +    Q   G  +         N A    ++ +  +   + ++VG L  ++T+ +L+  F   +  ++  ++++DS TGR+KGYGF+ F D     +A+ ++NG   + RPM++   T +
Sbjct:  143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 46/188 (24.47%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  160 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL----QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705
            +N T +E   +T++   L   +    L   FS  G+V +V++I ++ + +S+G  +VEF   ++    +    Q   G  +         N A    ++ +  +   + ++VG L  ++T+ +L+  F   +  ++  ++++DS TGR+KGYGF+ F D     +A+ ++NG   + RPM++   T +
Sbjct:  143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 52/206 (25.24%), Postives = 97/206 (47.09%), Query Frame = 1
Query:  148 NGSNNNFTNDETK-------------------TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            NGSN N   D T                    ++++G+L   + E  L   FS  GQV +++V R+  T +S GY +V + + A  E+ L+  + +L+    +P R+ W+    + R+T      ++F+ +L   + +  L +TF++ + ++   KV  D   G +KGYGFV +        A+  +NG+  + + + +     KK
Sbjct:   24 NGSNANVAADTTAGEASQTTSSTTPTAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--RPCRIMWSQRDPALRKT---GQGNVFIKNLDTAIDNKALHDTFAA-FGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKK 222          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NUCL_MESAU (Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 63/211 (29.86%), Postives = 96/211 (45.50%), Query Frame = 1
Query:  160 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQG 792
            N+  + E+KT+ + +L +   E  L   F    +   +KV +N+Q G+S+GY F+EF S   A++ L S +   M    +  RL      GS       S  ++FV  L+ D T+  L+E+F     SV+ A+++ D  TG +KG+GFV F  E +   A   M         + +D A PK   G             GG G  G R  G
Sbjct:  478 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQQ-GKSKGYAFIEFASFEDAKEALNSCNK--MEIEGRTIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEETLKESFEG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGR--------GGGRGGFGGRGGG 669          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 54/203 (26.60%), Postives = 99/203 (48.77%), Query Frame = 1
Query:  217 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPMRIDVAT---PKKA---SGXXXXXXXXALVLAGGPGSNGARVQGSQS 801
            M +  L+  F   G +   +++++ +TG S GY FV+F S   A+  +++ +G  + N  +  ++++A   G     E+  D +++V +L   +TD  L++ F  KY ++    ++ D  TGR +G  FVRF    E   A++ +N V    +S+P+ + +A      KA             A + A GPG N    +G Q+
Sbjct:  113 MTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRN--KRLKVSYARPGG-----ESIKDTNLYVTNLPRTITDDELEKIFG-KYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAEEHGKMKAHHFMNQLGMGPPAAPIPAAGPGYNNMVHRGRQN 307          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 45/168 (26.79%), Postives = 82/168 (48.81%), Query Frame = 1
Query:  160 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS--DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657
            N  T+D    + +  L   M +    + F   G + + K++R+K TGQS GYGFV +     A+K + + +G          +L   T   S  R  + S  D +++V  L   ++   +++ F S+Y  +  +++++D  TG ++G GF+RF    E   A+  +NG
Sbjct:   31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG---------LKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 45/168 (26.79%), Postives = 82/168 (48.81%), Query Frame = 1
Query:  160 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS--DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657
            N  T+D    + +  L   M +    + F   G + + K++R+K TGQS GYGFV +     A+K + + +G          +L   T   S  R  + S  D +++V  L   ++   +++ F S+Y  +  +++++D  TG ++G GF+RF    E   A+  +NG
Sbjct:   31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG---------LKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.367e-11
Identity = 44/162 (27.16%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  217 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPMRIDVA 696
            M +  L+  F   G +   +++++ +TG S GY FV+F S   A+  ++S +G  + N  +  ++++A   G     E+  D +++V +L   +TD  L++ F  KY ++    ++ D  TG+ +G  FVRF    E   A++ +N V    +S+P+ + +A
Sbjct:   96 MTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRN--KRLKVSYARPGG-----ESIKDTNLYVTNLPRTITDDELEKIF-GKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLA 249          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.367e-11
Identity = 45/174 (25.86%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            ++++G+L   + E  L+  FS  GQV +++V R+  T +S GY +V +   A  E+ L   + +L+    +P R+ W+    + R+T      ++F+ +L   + +  L +TF++ + ++   KV  D   G +KGYGFV +      + A+  +NG+  + + + +     KK
Sbjct:   43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDSAIDNKALHDTFAA-FGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 209          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.091e-11
Identity = 42/149 (28.19%), Postives = 75/149 (50.34%), Query Frame = 1
Query:  217 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657
            M +  L + FS  G+V + K+IR+K  G S GYGFV + +   AE+ + + +G          RL   T   S  R  +E+  D ++++  L   +T   +++ F   +  +  ++V++D  TG ++G  F+RF   +E   A+   NG
Sbjct:   31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNG---------LRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMF-LPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169          
The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
RBM39_MOUSE8.134e-1224.47RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM39_HUMAN8.134e-1224.47RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
PABP_COCIM8.134e-1225.24Polyadenylate-binding protein, cytoplasmic and nuc... [more]
NUCL_MESAU1.062e-1129.86Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2[more]
SXL_MUSDO1.388e-1126.60Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 ... [more]
ELAV3_MOUSE1.388e-1126.79ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ELAV3_HUMAN1.388e-1126.79ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
SXL_CHRRU2.367e-1127.16Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL ... [more]
PABP_EMENI2.367e-1125.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV1_XENTR3.091e-1128.19ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A08-B15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bp
GCGATGGCCATGATGCAACAGCAGCAGATGATGATGTATCCTCATCATTA
CATGCCGTACGGCGGCGGCGGTCACCCGTATTATCAGAACGGCGGCGGCG
TAAAGCAGCAGCAGCAGCAGCAACATGGATTGAGTAACGGAAAACAAAAC
GGATCTAATAATAATTTTACTAATGACGAGACTAAGACTATATGGATTGG
TGATTTGTTTCATTGGATGGACGAAACTTTTCTTCATAATTGTTTCTCAC
ATACTGGTCAGGTTGTAAATGTTAAAGTTATCCGCAATAAGCAAACTGGT
CAGTCAGAAGGGTATGGATTTGTTGAGTTCTATTCACGTGCTGCAGCTGA
GAAAGTTTTGCAGAGCTATAGTGGTTCTCTAATGCCAAATACTGACCAGC
CTTTCCGACTTAATTGGGCGACCTTTAGCGGCAGTGATAGACGAACAGAA
GCATGTTCTGATCTGTCTATATTTGTAGGAGATTTGGCTCCAGATGTAAC
TGATAGTATATTGCAGGAGACCTTTTCTAGTAAGTATCCATCTGTAAAAG
GAGCCAAAGTTATCATCGACTCGAATACTGGCCGTACAAAAGGTTACGGT
TTTGTTAGATTTGGTGATGAAAATGAGAGGTCAAGGGCCATGACCGAAAT
GAATGGTGTGTATTGTTCAAGTAGGCCGATGCGCATAGATGTTGCAACCC
CCAAAAAGGCTTCTGGATATCAACAACAGTATTCTTCACAAGCTCTTGTA
TTGGCTGGTGGACCTGGGTCAAATGGTGCTAGGGTCCAAGGTTCTCAATC
TGATGGCGAGTCCATAATGCGACTATATTTGTTGGGGCACTTGATTCTGA
TGTCA
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