CX046761

Overview
NameCX046761
Unique NameCX046761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046761_ssr60 microsatellite CX046761_ssr60:60..71. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046761_ssr104 microsatellite CX046761_ssr104:104..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10148 contig Csv1_Contig10148:379..1233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 42/149 (28.19%), Postives = 74/149 (49.66%), Query Frame = 1
Query:  217 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657
            M +  L + FS  G+V + K+IR+K  G S GYGFV + +   AE+ + + +G          RL   T   S  R  +E   D ++++  L   +T   +++ F   +  +  ++V++D  TG ++G  F+RF   +E   A+   NG
Sbjct:   31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNG---------LRLQSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMF-LPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NUCL_RAT (Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 63/216 (29.17%), Postives = 95/216 (43.98%), Query Frame = 1
Query:  160 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDG 807
            N+  + E+KT+ + +L +   E  L   F    +   +KV +N   G+S+GY F+EF S   A++ L S +   M    +  RL      GS       S  ++FV  L+ D T+  L+E+F     SV+ A+++ D  TG +KG+GFV F  E +   A   M         + +D A PK   G             GG G  G R  G    G
Sbjct:  481 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNPH-GKSKGYAFIEFASFEDAKEALNSCNK--MEIEGRTIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEETLKESFEG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGR--------GGGRGGFGGRGGGRGGRG 677          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 48/188 (25.53%), Postives = 94/188 (50.00%), Query Frame = 1
Query:  148 NGSNNNFTND---ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPMRIDVA 696
            +G +++  ND       + +  L   M +  L+  F   G +   +++R+ +TG S GY FV+F S   +++ ++  +G  + N  +  ++++A   G     E+  D +++V +L   +TD  L +T   KY S+    ++ D  TGR +G  FVR+    E   A++ +N V     S+P+ + +A
Sbjct:  110 SGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRN--KRLKVSYARPGG-----ESIKDTNLYVTNLPRTITDDQL-DTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 289          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 46/181 (25.41%), Postives = 87/181 (48.07%), Query Frame = 1
Query:  175 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 717
            DE   +++G L     +  L   F   G +++  V++N ++G+S G+GFV F        VLQ+   +L   T  P   N  T     ++ +      +F+G L  +VT++ L+ TF ++Y  V    ++ D    +++G+GF+ F +E+     +T    +  + + + I  A P+  SG
Sbjct:    4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTL----QKPKKGGGYKVFLGGLPSNVTETDLR-TFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEH-VTNERYINLNGKQVEIKKAEPRDGSG 178          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 44/162 (27.16%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  217 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPMRIDVA 696
            M +  L+  F   G +   +++R+ +TG S GY FV+F S   +++ ++  +G  + N  +  ++++A   G     E+  D +++V +L   +TD  L +T   KY S+    ++ D  TGR +G  FVR+    E   A++ +N V     S+P+ + +A
Sbjct:  138 MTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRN--KRLKVSYARPGG-----ESIKDTNLYVTNLPRTITDDQL-DTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 291          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 62/229 (27.07%), Postives = 102/229 (44.54%), Query Frame = 1
Query:  160 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL----------MPNTDQPFRLN-WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSN--GARVQGSQSDG 807
            NN   DE   +++G L     +  L + FS  G+VV+  ++++K T QS G+GFV+F        VL S   +L           P   QP R      +   + RTE      IFVG +  +  ++ L+E F +++  V    +I D+   R +G+GF+ F DE    +A+  M+      + + +  A P+ +               G PGSN  G+R   S ++G
Sbjct:    2 NNQGGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYF-NRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKSQ----------TPGPPGSNQWGSRAMQSTANG 218          
The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ELV1B_XENLA4.037e-1128.19ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
NUCL_RAT5.273e-1129.17Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3[more]
SXL_DROME6.886e-1125.53Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]
RB27C_DROME6.886e-1125.41Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]
SXL_DROSU8.994e-1127.16Protein sex-lethal OS=Drosophila subobscura GN=Sxl... [more]
DAZP1_XENLA8.994e-1127.07DAZ-associated protein 1 OS=Xenopus laevis GN=daza... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A08-B15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bp
GCGATGGCCATGATGCAACAGCAGCAGATGATGATGTATCCTCATCATTA
CATGCCGTACGGCGGCGGCGGTCACCCGTATTATCAGAACGGCGGCGGCG
TAAAGCAGCAGCAGCAGCAGCAACATGGATTGAGTAACGGAAAACAAAAC
GGATCTAATAATAATTTTACTAATGACGAGACTAAGACTATATGGATTGG
TGATTTGTTTCATTGGATGGACGAAACTTTTCTTCATAATTGTTTCTCAC
ATACTGGTCAGGTTGTAAATGTTAAAGTTATCCGCAATAAGCAAACTGGT
CAGTCAGAAGGGTATGGATTTGTTGAGTTCTATTCACGTGCTGCAGCTGA
GAAAGTTTTGCAGAGCTATAGTGGTTCTCTAATGCCAAATACTGACCAGC
CTTTCCGACTTAATTGGGCGACCTTTAGCGGCAGTGATAGACGAACAGAA
GCATGTTCTGATCTGTCTATATTTGTAGGAGATTTGGCTCCAGATGTAAC
TGATAGTATATTGCAGGAGACCTTTTCTAGTAAGTATCCATCTGTAAAAG
GAGCCAAAGTTATCATCGACTCGAATACTGGCCGTACAAAAGGTTACGGT
TTTGTTAGATTTGGTGATGAAAATGAGAGGTCAAGGGCCATGACCGAAAT
GAATGGTGTGTATTGTTCAAGTAGGCCGATGCGCATAGATGTTGCAACCC
CCAAAAAGGCTTCTGGATATCAACAACAGTATTCTTCACAAGCTCTTGTA
TTGGCTGGTGGACCTGGGTCAAATGGTGCTAGGGTCCAAGGTTCTCAATC
TGATGGCGAGTCCATAATGCGACTATATTTGTTGGGGCACTTGATTCTGA
TGTCA
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