CX046761
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16 Identity = 62/192 (32.29%), Postives = 94/192 (48.96%), Query Frame = 1 Query: 163 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG------SLMPNTDQP--------FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 696 NF+ D I++G+L D L F G V V+VI +K TG+S G+GFV S+ E Q ++G +L N+ P FR N + GS S ++VG+LA V L ET S+ V AKV+ D ++GR++G+GFV + E + A+ ++GV + R +R+ A Sbjct: 82 NFSPD--LKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDAL-ETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15 Identity = 52/191 (27.23%), Postives = 95/191 (49.74%), Query Frame = 1 Query: 178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK---------------QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705 + +T+++G+L + E + FS G + K+I + Q ++ Y FVEFY A L + +G + + ++NWAT S ++ + + +FVGDL+P++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G + R +R + AT K Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193 HSP 2 Score: 68.9366 bits (167), Expect = 4.037e-11 Identity = 44/173 (25.43%), Postives = 85/173 (49.13%), Query Frame = 1 Query: 190 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT------FSGSDRRTE-----------ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657 +++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE + G + + R NWAT S + T+ + + +++ G +A +TD ++++TF S + + +V + KGY FVRF + A+ +NG Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG--RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15 Identity = 43/76 (56.58%), Postives = 50/76 (65.79%), Query Frame = 1 Query: 460 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687 D IF GDL +V D IL FS +YPS AKVI D TG+TKGYGFV F D N+ RAM EMNG Y SRP+++ Sbjct: 292 DFRIFCGDLGNEVNDDILARAFS-RYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKL 366
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15 Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 1 Query: 460 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687 D IF GDL +V D IL FS +YPS AKV+ D TG+TKGYGFV F D N+ RAM EMNG Y SRP+++ Sbjct: 302 DFRIFCGDLGNEVNDDILARAFS-RYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKL 376
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.608e-15 Identity = 61/186 (32.80%), Postives = 93/186 (50.00%), Query Frame = 1 Query: 163 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG------SLMPNTDQP--FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 696 NF+ D I++G+L D L F G V V+VI +K TG+S G+GFV S+ E Q ++G +L N+ P R N + GS S ++VG+LA V L ET S+ V AKV+ D ++GR++G+GFV + E + A+ ++GV + R +R+ A Sbjct: 82 NFSPD--LKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDAL-ETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15 Identity = 50/167 (29.94%), Postives = 96/167 (57.49%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687 ++++GDL + ++ L + F G VV V+V R+ T +S GYG+V F + A + +Q + +P +P R+ ++ S RR+ A +IF+ +L + L +TFSS + ++ KV +DS +G++KGYGFV++ +E +A+ ++NG+ + + + + Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL--NYIPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFSS-FGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196 HSP 2 Score: 69.707 bits (169), Expect = 2.367e-11 Identity = 49/193 (25.39%), Postives = 96/193 (49.74%), Query Frame = 1 Query: 169 TNDETK--TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 T ++TK +++ +L + L N F G++ + V+++ + G+S+G+GFV F + A + ++S Y G +++ L + +++V +L P ++D L+E FS + +V +KV+ D N G +KG GFV F E + AM++++G S+P+ + +A K+ Sbjct: 208 TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSP-FGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKE 397
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.861e-15 Identity = 57/183 (31.15%), Postives = 96/183 (52.46%), Query Frame = 1 Query: 178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS---DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA--TPKKA 711 E +++G+L + +D L F G V +VI N++T +S G+GFV + AEK ++ +G M + +N A GS R ++VG+L DV S L++ FS ++ V A+V+ D TGR++G+GFV E+E + A+ ++G R +R++VA P++A Sbjct: 53 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDG--RQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFS-EHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRA 232
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 7.861e-15 Identity = 49/163 (30.06%), Postives = 90/163 (55.21%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675 ++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L + + ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++ KV+ D N +KGYGFV F + RA+ +MNG+ + R Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 1.027e-14 Identity = 52/181 (28.73%), Postives = 88/181 (48.62%), Query Frame = 1 Query: 175 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 717 ++ TI++G+L + ++ L G VVN+ + R++ G+GF EF E Q + + +P R+N A+ DR ++FVG+L P V + +L +TFS+ VK +V D N GR+KGYGFV + A+ MN + ++P+ + A ++ G Sbjct: 8 NQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKL--FGKPIRVNRAS---QDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKG 182
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM42_XENLA (RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.027e-14 Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1 Query: 460 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687 D IF GDL +V D IL FS +YPS AKVI D TG+TKGYGFV F D N+ RA EMNG Y SRP+++ Sbjct: 292 DFRIFCGDLGNEVNDDILARAFS-RYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRATREMNGKYVGSRPIKL 366 The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bpback to top |