CX046761

Overview
NameCX046761
Unique NameCX046761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046761_ssr60 microsatellite CX046761_ssr60:60..71. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046761_ssr104 microsatellite CX046761_ssr104:104..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10148 contig Csv1_Contig10148:379..1233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16
Identity = 62/192 (32.29%), Postives = 94/192 (48.96%), Query Frame = 1
Query:  163 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG------SLMPNTDQP--------FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 696
            NF+ D    I++G+L    D   L   F   G V  V+VI +K TG+S G+GFV   S+   E   Q ++G      +L  N+  P        FR N +   GS       S   ++VG+LA  V    L ET  S+   V  AKV+ D ++GR++G+GFV +    E + A+  ++GV  + R +R+  A
Sbjct:   82 NFSPD--LKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDAL-ETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 52/191 (27.23%), Postives = 95/191 (49.74%), Query Frame = 1
Query:  178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK---------------QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705
            + +T+++G+L   + E  +   FS  G   + K+I  +               Q   ++ Y FVEFY    A   L + +G  +   +   ++NWAT   S ++ +  +   +FVGDL+P++T   ++  F+  +  +  A+V+ D  TG++KGYGFV F ++ +   A+  M G +   R +R + AT K
Sbjct:    7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193          

HSP 2 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 44/173 (25.43%), Postives = 85/173 (49.13%), Query Frame = 1
Query:  190 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT------FSGSDRRTE-----------ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657
            +++GDL   +    + + F+  G++ + +V+++  TG+S+GYGFV FY++  AE  +    G  +    +  R NWAT       S  +  T+           +  + +++ G +A  +TD ++++TF S +  +   +V  +      KGY FVRF      + A+  +NG
Sbjct:  116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG--RQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15
Identity = 43/76 (56.58%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  460 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687
            D  IF GDL  +V D IL   FS +YPS   AKVI D  TG+TKGYGFV F D N+  RAM EMNG Y  SRP+++
Sbjct:  292 DFRIFCGDLGNEVNDDILARAFS-RYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKL 366          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  460 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687
            D  IF GDL  +V D IL   FS +YPS   AKV+ D  TG+TKGYGFV F D N+  RAM EMNG Y  SRP+++
Sbjct:  302 DFRIFCGDLGNEVNDDILARAFS-RYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKL 376          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.608e-15
Identity = 61/186 (32.80%), Postives = 93/186 (50.00%), Query Frame = 1
Query:  163 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG------SLMPNTDQP--FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 696
            NF+ D    I++G+L    D   L   F   G V  V+VI +K TG+S G+GFV   S+   E   Q ++G      +L  N+  P   R N +   GS       S   ++VG+LA  V    L ET  S+   V  AKV+ D ++GR++G+GFV +    E + A+  ++GV  + R +R+  A
Sbjct:   82 NFSPD--LKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDAL-ETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15
Identity = 50/167 (29.94%), Postives = 96/167 (57.49%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687
            ++++GDL   + ++ L + F   G VV V+V R+  T +S GYG+V F +   A + +Q    + +P   +P R+ ++    S RR+ A    +IF+ +L   +    L +TFSS + ++   KV +DS +G++KGYGFV++ +E    +A+ ++NG+  + + + +
Sbjct:   37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL--NYIPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFSS-FGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196          

HSP 2 Score: 69.707 bits (169), Expect = 2.367e-11
Identity = 49/193 (25.39%), Postives = 96/193 (49.74%), Query Frame = 1
Query:  169 TNDETK--TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            T ++TK   +++ +L     +  L N F   G++ +  V+++ + G+S+G+GFV F +   A + ++S           Y G     +++   L            +     +++V +L P ++D  L+E FS  + +V  +KV+ D N G +KG GFV F    E + AM++++G    S+P+ + +A  K+
Sbjct:  208 TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSP-FGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKE 397          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.861e-15
Identity = 57/183 (31.15%), Postives = 96/183 (52.46%), Query Frame = 1
Query:  178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS---DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA--TPKKA 711
            E   +++G+L + +D   L   F   G V   +VI N++T +S G+GFV   +   AEK ++  +G  M    +   +N A   GS  R           ++VG+L  DV  S L++ FS ++  V  A+V+ D  TGR++G+GFV    E+E + A+  ++G     R +R++VA   P++A
Sbjct:   53 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDG--RQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFS-EHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRA 232          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 7.861e-15
Identity = 49/163 (30.06%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675
            ++++GDL   + E  L+  FS  G +++++V R+  T +S GY +V F   A AE+ L + +  ++    +P R+ W+    S R++      +IF+ +L   + +  L +TFS+ + ++   KV+ D N   +KGYGFV F  +    RA+ +MNG+  + R
Sbjct:   12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.027e-14
Identity = 52/181 (28.73%), Postives = 88/181 (48.62%), Query Frame = 1
Query:  175 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 717
            ++  TI++G+L   + ++ L       G VVN+ + R++      G+GF EF      E   Q  +   +    +P R+N A+    DR        ++FVG+L P V + +L +TFS+    VK  +V  D N GR+KGYGFV +        A+  MN  +  ++P+ +  A  ++  G
Sbjct:    8 NQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKL--FGKPIRVNRAS---QDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKG 182          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM42_XENLA (RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.027e-14
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  460 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687
            D  IF GDL  +V D IL   FS +YPS   AKVI D  TG+TKGYGFV F D N+  RA  EMNG Y  SRP+++
Sbjct:  292 DFRIFCGDLGNEVNDDILARAFS-RYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRATREMNGKYVGSRPIKL 366          
The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ROC1_NICPL7.110e-1632.2930 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
TIAR_MOUSE1.584e-1527.23Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
RBM42_XENTR2.069e-1556.58RNA-binding protein 42 OS=Xenopus tropicalis GN=rb... [more]
RBM42_DANRE3.528e-1555.26RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=... [more]
ROC1_NICSY4.608e-1532.8029 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
PABP2_ARATH6.019e-1529.94Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
ROC1_SPIOL7.861e-1531.1528 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
PABPA_XENLA7.861e-1530.06Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
SAP49_SCHPO1.027e-1428.73Spliceosome-associated protein 49 OS=Schizosacchar... [more]
RBM42_XENLA1.027e-1455.26RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A08-B15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bp
GCGATGGCCATGATGCAACAGCAGCAGATGATGATGTATCCTCATCATTA
CATGCCGTACGGCGGCGGCGGTCACCCGTATTATCAGAACGGCGGCGGCG
TAAAGCAGCAGCAGCAGCAGCAACATGGATTGAGTAACGGAAAACAAAAC
GGATCTAATAATAATTTTACTAATGACGAGACTAAGACTATATGGATTGG
TGATTTGTTTCATTGGATGGACGAAACTTTTCTTCATAATTGTTTCTCAC
ATACTGGTCAGGTTGTAAATGTTAAAGTTATCCGCAATAAGCAAACTGGT
CAGTCAGAAGGGTATGGATTTGTTGAGTTCTATTCACGTGCTGCAGCTGA
GAAAGTTTTGCAGAGCTATAGTGGTTCTCTAATGCCAAATACTGACCAGC
CTTTCCGACTTAATTGGGCGACCTTTAGCGGCAGTGATAGACGAACAGAA
GCATGTTCTGATCTGTCTATATTTGTAGGAGATTTGGCTCCAGATGTAAC
TGATAGTATATTGCAGGAGACCTTTTCTAGTAAGTATCCATCTGTAAAAG
GAGCCAAAGTTATCATCGACTCGAATACTGGCCGTACAAAAGGTTACGGT
TTTGTTAGATTTGGTGATGAAAATGAGAGGTCAAGGGCCATGACCGAAAT
GAATGGTGTGTATTGTTCAAGTAGGCCGATGCGCATAGATGTTGCAACCC
CCAAAAAGGCTTCTGGATATCAACAACAGTATTCTTCACAAGCTCTTGTA
TTGGCTGGTGGACCTGGGTCAAATGGTGCTAGGGTCCAAGGTTCTCAATC
TGATGGCGAGTCCATAATGCGACTATATTTGTTGGGGCACTTGATTCTGA
TGTCA
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