CX046761
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.287e-14 Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 1 Query: 460 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687 D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++ RAM EMNG Y SRP+++ Sbjct: 380 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 454
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.287e-14 Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 1 Query: 460 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687 D IF GDL +V D IL FS ++PS AKVI D TG+TKGYGFV F D ++ RAM EMNG Y SRP+++ Sbjct: 348 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 422
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.287e-14 Identity = 49/163 (30.06%), Postives = 89/163 (54.60%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675 ++++GDL E L+ FS G +++++V R+ T +S GY +V F A AE+ L + + ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++ KV+ D N +KGYGFV F + RA+ +MNG+ + R Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166 HSP 2 Score: 73.9442 bits (180), Expect = 1.255e-12 Identity = 51/188 (27.13%), Postives = 95/188 (50.53%), Query Frame = 1 Query: 178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 E ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F A+K + Q Y G ++ L R ++++V +L + D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+ + +A K+ Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14 Identity = 49/174 (28.16%), Postives = 95/174 (54.60%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 ++++G+L + E L FS G V +++V R+ T +S GY +V + + A EK L+ + +L+ +P R+ W+ + R+T A +IF+ +L + + L +TF++ + ++ KV D + G +KGYGFV + + S+A+ +NG+ + + + + PKK Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKG--RPCRIMWSQRDPALRKTGAG---NIFIKNLDAAIDNKALHDTFAA-FGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK 227
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14 Identity = 48/174 (27.59%), Postives = 94/174 (54.02%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 ++++G+L + E L FS G V +++V R+ T +S GY +V + + A EK L+ + +L+ +P R+ W+ + R+T ++F+ +L + + L +TF++ + ++ KV D N G +KGYGFV + + S+A+ +NG+ + + + + PKK Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKG--RPCRIMWSQRDPALRKT---GQGNVFIKNLDVAIDNKALHDTFAA-FGNILSCKVAQDEN-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK 228 HSP 2 Score: 69.3218 bits (168), Expect = 3.091e-11 Identity = 43/156 (27.56%), Postives = 83/156 (53.21%), Query Frame = 1 Query: 190 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLS-IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 654 ++I +L +D LH+ F+ G +++ KV ++ + G S+GYGFV + + AA + ++ +G L+ + + E ++ + I+V ++ P+VTD + F KY V + + D TG+++G+GFV F + S+A+ E+N Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFE-KYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELN 304
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.901e-14 Identity = 55/184 (29.89%), Postives = 94/184 (51.09%), Query Frame = 1 Query: 178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS-----GSLM------PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 696 E +++G+L + +D L F G V +VI N++T +S G+GFV + A+K ++ YS G L+ P +P R TF + R I+VG++ D+ D+ L++ FS ++ V A+V+ D +GR++G+GFV E E S A+ ++G R +R++ A Sbjct: 95 EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAP-RTFQPTYR---------IYVGNIPWDIDDARLEQVFS-EHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14 Identity = 49/174 (28.16%), Postives = 92/174 (52.87%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 ++++G+L + E L++ FS G + +++V R+ T S GY +V + A +K +Q + + + +P R+ W S D +IF+ +L P + + L ETFS+ + V KV +D N G ++G+GFV F +E++ A+ +NG+ + + + + PKK Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEI--NGRPCRIMW---SERDPAIRKKGSGNIFIKNLHPAIDNKALHETFST-FGEVLSCKVALDEN-GNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKK 217
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14 Identity = 53/186 (28.49%), Postives = 98/186 (52.69%), Query Frame = 1 Query: 169 TNDETKT------IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 TN+E ++ +++GDL + E L++ FS G V +++V R+ T S GY +V F AA+ ++ + P + R+ W+ S R+ A +IF+ +L PD+ + L +TF S + ++ +KV D TG++KG+G+V F ++ S A+ +NG+ + + + + KK Sbjct: 24 TNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKL--NFTPIKGKLCRIMWSQRDPSLRKKGAG---NIFIKNLHPDIDNKALYDTF-SVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKK 202
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 8.691e-14 Identity = 56/181 (30.94%), Postives = 91/181 (50.28%), Query Frame = 1 Query: 178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS--------DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 696 E +++G+L + +D L F G V +VI N+ T QS G+GFV + AEK ++ Y+ D RL T + + RR E I+VG++ + D+ L++ FS ++ V A+V+ D TGR++G+GFV E E S A+ ++G R +R++VA Sbjct: 134 EDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYN-----RYDVNGRL--LTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFS-EHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 8.691e-14 Identity = 47/163 (28.83%), Postives = 89/163 (54.60%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675 ++++GDL + E L+ FS G V++++V R+ T +S GY +V F A AE+ L + + ++ +P R+ W+ S R++ ++F+ +L + + L +TFS+ + ++ KV+ D N +KGY FV F + +A+ +MNG+ + R Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166 HSP 2 Score: 75.485 bits (184), Expect = 4.313e-13 Identity = 50/188 (26.60%), Postives = 93/188 (49.47%), Query Frame = 1 Query: 178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS-----------LMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 E ++I + +D+ L FS G+ ++VKV+R+ G+S+G+GFV + A K ++ +G ++ L R +++++ +L + D L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG S+P+ + +A K+ Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372 The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bpback to top |