CX046761

Overview
NameCX046761
Unique NameCX046761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046761_ssr60 microsatellite CX046761_ssr60:60..71. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046761_ssr104 microsatellite CX046761_ssr104:104..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10148 contig Csv1_Contig10148:379..1233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.287e-14
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  460 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687
            D  IF GDL  +V D IL   FS ++PS   AKVI D  TG+TKGYGFV F D ++  RAM EMNG Y  SRP+++
Sbjct:  380 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 454          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.287e-14
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  460 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687
            D  IF GDL  +V D IL   FS ++PS   AKVI D  TG+TKGYGFV F D ++  RAM EMNG Y  SRP+++
Sbjct:  348 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 422          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.287e-14
Identity = 49/163 (30.06%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675
            ++++GDL     E  L+  FS  G +++++V R+  T +S GY +V F   A AE+ L + +  ++    +P R+ W+    S R++      +IF+ +L   + +  L +TFS+ + ++   KV+ D N   +KGYGFV F  +    RA+ +MNG+  + R
Sbjct:   12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166          

HSP 2 Score: 73.9442 bits (180), Expect = 1.255e-12
Identity = 51/188 (27.13%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            E   ++I +    MD+  L + F   G  ++VKV+ + ++G+S+G+GFV F     A+K +           Q Y G      ++   L          R      ++++V +L   + D  L++ FS  + ++  AKV+++   GR+KG+GFV F    E ++A+TEMNG   +++P+ + +A  K+
Sbjct:  189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 49/174 (28.16%), Postives = 95/174 (54.60%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            ++++G+L   + E  L   FS  G V +++V R+  T +S GY +V + + A  EK L+  + +L+    +P R+ W+    + R+T A    +IF+ +L   + +  L +TF++ + ++   KV  D + G +KGYGFV +  +   S+A+  +NG+  + + + +    PKK
Sbjct:   61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKG--RPCRIMWSQRDPALRKTGAG---NIFIKNLDAAIDNKALHDTFAA-FGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK 227          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 48/174 (27.59%), Postives = 94/174 (54.02%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            ++++G+L   + E  L   FS  G V +++V R+  T +S GY +V + + A  EK L+  + +L+    +P R+ W+    + R+T      ++F+ +L   + +  L +TF++ + ++   KV  D N G +KGYGFV +  +   S+A+  +NG+  + + + +    PKK
Sbjct:   62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKG--RPCRIMWSQRDPALRKT---GQGNVFIKNLDVAIDNKALHDTFAA-FGNILSCKVAQDEN-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK 228          

HSP 2 Score: 69.3218 bits (168), Expect = 3.091e-11
Identity = 43/156 (27.56%), Postives = 83/156 (53.21%), Query Frame = 1
Query:  190 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLS-IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 654
            ++I +L   +D   LH+ F+  G +++ KV ++ + G S+GYGFV + +  AA + ++  +G L+         +        +  E  ++ + I+V ++ P+VTD   +  F  KY  V  + +  D  TG+++G+GFV F    + S+A+ E+N
Sbjct:  151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFE-KYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELN 304          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.901e-14
Identity = 55/184 (29.89%), Postives = 94/184 (51.09%), Query Frame = 1
Query:  178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS-----GSLM------PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 696
            E   +++G+L + +D   L   F   G V   +VI N++T +S G+GFV   +   A+K ++ YS     G L+      P   +P R    TF  + R         I+VG++  D+ D+ L++ FS ++  V  A+V+ D  +GR++G+GFV    E E S A+  ++G     R +R++ A
Sbjct:   95 EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAP-RTFQPTYR---------IYVGNIPWDIDDARLEQVFS-EHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14
Identity = 49/174 (28.16%), Postives = 92/174 (52.87%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            ++++G+L   + E  L++ FS  G + +++V R+  T  S GY +V +    A +K +Q  + + +    +P R+ W   S  D         +IF+ +L P + +  L ETFS+ +  V   KV +D N G ++G+GFV F +E++   A+  +NG+  +   + + +  PKK
Sbjct:   51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEI--NGRPCRIMW---SERDPAIRKKGSGNIFIKNLHPAIDNKALHETFST-FGEVLSCKVALDEN-GNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKK 217          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.095e-14
Identity = 53/186 (28.49%), Postives = 98/186 (52.69%), Query Frame = 1
Query:  169 TNDETKT------IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            TN+E ++      +++GDL   + E  L++ FS  G V +++V R+  T  S GY +V F    AA+  ++    +  P   +  R+ W+    S R+  A    +IF+ +L PD+ +  L +TF S + ++  +KV  D  TG++KG+G+V F ++   S A+  +NG+  + + + +     KK
Sbjct:   24 TNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKL--NFTPIKGKLCRIMWSQRDPSLRKKGAG---NIFIKNLHPDIDNKALYDTF-SVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKK 202          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.691e-14
Identity = 56/181 (30.94%), Postives = 91/181 (50.28%), Query Frame = 1
Query:  178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS--------DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 696
            E   +++G+L + +D   L   F   G V   +VI N+ T QS G+GFV   +   AEK ++ Y+       D   RL   T + + RR E              I+VG++   + D+ L++ FS ++  V  A+V+ D  TGR++G+GFV    E E S A+  ++G     R +R++VA
Sbjct:  134 EDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYN-----RYDVNGRL--LTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFS-EHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.691e-14
Identity = 47/163 (28.83%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675
            ++++GDL   + E  L+  FS  G V++++V R+  T +S GY +V F   A AE+ L + +  ++    +P R+ W+    S R++      ++F+ +L   + +  L +TFS+ + ++   KV+ D N   +KGY FV F  +    +A+ +MNG+  + R
Sbjct:   12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166          

HSP 2 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 50/188 (26.60%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS-----------LMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            E   ++I +    +D+  L   FS  G+ ++VKV+R+   G+S+G+GFV +     A K ++  +G                 ++   L          R      +++++ +L   + D  L++ FS  + S+  AKV+++   GR+KG+GFV F    E ++A+TEMNG    S+P+ + +A  K+
Sbjct:  189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372          
The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
RBM42_HUMAN2.287e-1453.95RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE... [more]
RBM42_BOVIN2.287e-1453.95RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2... [more]
PABP1_PONAB2.287e-1430.06Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP_NEUCR2.987e-1428.16Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_MAGGR2.987e-1427.59Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ROC3_NICSY3.901e-1429.8928 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PABP_KLULA5.095e-1428.16Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANGA5.095e-1428.49Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ROC4_NICSY8.691e-1430.9431 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PABP4_HUMAN8.691e-1428.83Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A08-B15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bp
GCGATGGCCATGATGCAACAGCAGCAGATGATGATGTATCCTCATCATTA
CATGCCGTACGGCGGCGGCGGTCACCCGTATTATCAGAACGGCGGCGGCG
TAAAGCAGCAGCAGCAGCAGCAACATGGATTGAGTAACGGAAAACAAAAC
GGATCTAATAATAATTTTACTAATGACGAGACTAAGACTATATGGATTGG
TGATTTGTTTCATTGGATGGACGAAACTTTTCTTCATAATTGTTTCTCAC
ATACTGGTCAGGTTGTAAATGTTAAAGTTATCCGCAATAAGCAAACTGGT
CAGTCAGAAGGGTATGGATTTGTTGAGTTCTATTCACGTGCTGCAGCTGA
GAAAGTTTTGCAGAGCTATAGTGGTTCTCTAATGCCAAATACTGACCAGC
CTTTCCGACTTAATTGGGCGACCTTTAGCGGCAGTGATAGACGAACAGAA
GCATGTTCTGATCTGTCTATATTTGTAGGAGATTTGGCTCCAGATGTAAC
TGATAGTATATTGCAGGAGACCTTTTCTAGTAAGTATCCATCTGTAAAAG
GAGCCAAAGTTATCATCGACTCGAATACTGGCCGTACAAAAGGTTACGGT
TTTGTTAGATTTGGTGATGAAAATGAGAGGTCAAGGGCCATGACCGAAAT
GAATGGTGTGTATTGTTCAAGTAGGCCGATGCGCATAGATGTTGCAACCC
CCAAAAAGGCTTCTGGATATCAACAACAGTATTCTTCACAAGCTCTTGTA
TTGGCTGGTGGACCTGGGTCAAATGGTGCTAGGGTCCAAGGTTCTCAATC
TGATGGCGAGTCCATAATGCGACTATATTTGTTGGGGCACTTGATTCTGA
TGTCA
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