CX046761
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13 Identity = 53/178 (29.78%), Postives = 94/178 (52.81%), Query Frame = 1 Query: 178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL-----SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 696 E +++G+L + ++ L F G V +VI N++T QS G+GFV S AE ++ ++ + + +N A GS R E + ++VG+L DV + L++ FS ++ V A+V+ D TGR++G+GFV D +E + A++ ++G R +R++VA Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDL--NGRLLTVNKAAPRGS--RPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFS-EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13 Identity = 48/178 (26.97%), Postives = 92/178 (51.69%), Query Frame = 1 Query: 175 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 + + ++++G+L ++E L FS GQV +++V R+ T +S GY +V F+ A + ++ + SL+ +P R+ W+ S RR D +IF+ +L P + + L +TFS+ + + KV D G++K +GFV + A+ +NG+ + R + + K+ Sbjct: 55 EASASLYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDG--RPCRIMWSQRDPSLRRN---GDGNIFIKNLHPAIDNKALHDTFSA-FGRILSCKVATD-ELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKR 225
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13 Identity = 44/149 (29.53%), Postives = 77/149 (51.68%), Query Frame = 1 Query: 217 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657 M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G RL T S R +E D ++++ L +T +++ F S++ + ++V++D TG ++G F+RF +E A+T NG Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG---------LRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 7.357e-13 Identity = 46/173 (26.59%), Postives = 86/173 (49.71%), Query Frame = 1 Query: 169 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687 T + ++++G+L + E L F+ G V +++V R+ T +S GY +V F++ EK L + +L+ +P R+ W S D ++F+ +L P + + L +TFS+ + + KV +D G KGYGFV F + A+ +NG+ + + + + Sbjct: 75 TAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKG--RPCRIMW---SQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSA-FGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 7.357e-13 Identity = 46/149 (30.87%), Postives = 77/149 (51.68%), Query Frame = 1 Query: 217 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS--DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657 M + L + F G++ + K++R+K TGQS GYGFV + AEK + + +G RL T S R + S D +++V L +T L++ F S+Y + +++++D TG ++G GF+RF E A+ +NG Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.255e-12 Identity = 45/163 (27.61%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675 ++++GDL + E L+ FS G +++++V R+ T +S GY ++ F A AE+ L + + ++ QP R+ W+ R++ +IF+ +L + + L +TFS+ + ++ KV D + R G+GFV F +A+ MNG+ + R Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALYDTFST-FGNILSCKVACDEHGSR--GFGFVHFETHEAAQQAINTMNGMLLNDR 166 HSP 2 Score: 71.633 bits (174), Expect = 6.228e-12 Identity = 52/188 (27.66%), Postives = 92/188 (48.94%), Query Frame = 1 Query: 178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 E I++ +L +DE L + FS G++++VKV+R+ +G S +GFV F A+K + Y+G ++ L R ++++V +L + D L++ FS Y + AKV+ + G +KG+GFV F E ++A+TEMNG ++P+ + +A K+ Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSP-YGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 372
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.255e-12 Identity = 51/188 (27.13%), Postives = 95/188 (50.53%), Query Frame = 1 Query: 178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 E ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F A+K + Q Y G ++ L R ++++V +L + D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG +++P+ + +A K+ Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372 HSP 2 Score: 72.0182 bits (175), Expect = 4.769e-12 Identity = 46/165 (27.88%), Postives = 84/165 (50.91%), Query Frame = 1 Query: 181 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675 T ++++GDL + E L+ FS G ++++++ R+ T S Y +V F AE L + + ++ +P R+ W+ S R++ + IFV +L + + L +T S+ + ++ V+ D N +KGYGFV F RA+ +MNG+ + R Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFVKNLDKSINNKALYDTVSA-FGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12 Identity = 46/179 (25.70%), Postives = 93/179 (51.96%), Query Frame = 1 Query: 172 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 + + ++++G+L + E L FS GQV +++V R+ T +S GY +V + S EK L+ + +++ +P R+ W+ + R+T ++F+ +L + + L +TF++ + ++ KV D G +KGYGFV + + A+ +NG+ + + + + PKK Sbjct: 44 HQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDHAIDNKALHDTFAA-FGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKK 215
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12 Identity = 46/182 (25.27%), Postives = 95/182 (52.20%), Query Frame = 1 Query: 163 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 N + + ++++G+L + E L+ FS GQV +++V R+ T +S GY +V + + A E+ L+ + +L+ +P R+ W+ + R+T ++F+ +L + + L +TF++ + ++ KV D G +KGYGFV + + A+ +NG+ + + + + KK Sbjct: 42 NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDSAIDNKALHDTFAA-FGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 216
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12 Identity = 49/163 (30.06%), Postives = 89/163 (54.60%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675 ++++GDL ++E+ L + F+ V N++V R+ T +S GY +V F + A + ++S + + P D+P R+ S D T ++F+ +L + + L ETFSS + ++ KV +D GR+KGYGFV+F E A+ ++NG+ + + Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYA--PIRDRPIRI---MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSS-FGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDK 200 The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bpback to top |