CX046761

Overview
NameCX046761
Unique NameCX046761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046761_ssr60 microsatellite CX046761_ssr60:60..71. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046761_ssr104 microsatellite CX046761_ssr104:104..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10148 contig Csv1_Contig10148:379..1233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 53/178 (29.78%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL-----SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 696
            E   +++G+L + ++   L   F   G V   +VI N++T QS G+GFV   S   AE  ++ ++   +    +   +N A   GS  R E    +      ++VG+L  DV +  L++ FS ++  V  A+V+ D  TGR++G+GFV   D +E + A++ ++G     R +R++VA
Sbjct:  148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDL--NGRLLTVNKAAPRGS--RPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFS-EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 48/178 (26.97%), Postives = 92/178 (51.69%), Query Frame = 1
Query:  175 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            + + ++++G+L   ++E  L   FS  GQV +++V R+  T +S GY +V F+  A   + ++  + SL+    +P R+ W+    S RR     D +IF+ +L P + +  L +TFS+ +  +   KV  D   G++K +GFV +        A+  +NG+  + R + +     K+
Sbjct:   55 EASASLYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDG--RPCRIMWSQRDPSLRRN---GDGNIFIKNLHPAIDNKALHDTFSA-FGRILSCKVATD-ELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKR 225          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 44/149 (29.53%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  217 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657
            M +  L + FS  G+V + K+IR+K  G S GYGFV + +   AE+ + + +G          RL   T   S  R  +E   D ++++  L   +T   +++ F S++  +  ++V++D  TG ++G  F+RF   +E   A+T  NG
Sbjct:   31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG---------LRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.357e-13
Identity = 46/173 (26.59%), Postives = 86/173 (49.71%), Query Frame = 1
Query:  169 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687
            T   + ++++G+L   + E  L   F+  G V +++V R+  T +S GY +V F++    EK L   + +L+    +P R+ W   S  D         ++F+ +L P + +  L +TFS+ +  +   KV +D   G  KGYGFV F      + A+  +NG+  + + + +
Sbjct:   75 TAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKG--RPCRIMW---SQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSA-FGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.357e-13
Identity = 46/149 (30.87%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  217 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS--DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657
            M +  L + F   G++ + K++R+K TGQS GYGFV +     AEK + + +G          RL   T   S  R  + S  D +++V  L   +T   L++ F S+Y  +  +++++D  TG ++G GF+RF    E   A+  +NG
Sbjct:   50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.255e-12
Identity = 45/163 (27.61%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675
            ++++GDL   + E  L+  FS  G +++++V R+  T +S GY ++ F   A AE+ L + +  ++    QP R+ W+      R++      +IF+ +L   + +  L +TFS+ + ++   KV  D +  R  G+GFV F       +A+  MNG+  + R
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALYDTFST-FGNILSCKVACDEHGSR--GFGFVHFETHEAAQQAINTMNGMLLNDR 166          

HSP 2 Score: 71.633 bits (174), Expect = 6.228e-12
Identity = 52/188 (27.66%), Postives = 92/188 (48.94%), Query Frame = 1
Query:  178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            E   I++ +L   +DE  L + FS  G++++VKV+R+  +G S  +GFV F     A+K +             Y+G      ++   L          R      ++++V +L   + D  L++ FS  Y  +  AKV+ +   G +KG+GFV F    E ++A+TEMNG    ++P+ + +A  K+
Sbjct:  189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSP-YGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 372          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.255e-12
Identity = 51/188 (27.13%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            E   ++I +    MD+  L + F   G  ++VKV+ + ++G+S+G+GFV F     A+K +           Q Y G      ++   L          R      ++++V +L   + D  L++ FS  + ++  AKV+++   GR+KG+GFV F    E ++A+TEMNG   +++P+ + +A  K+
Sbjct:  189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372          

HSP 2 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 46/165 (27.88%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  181 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675
            T ++++GDL   + E  L+  FS  G ++++++ R+  T  S  Y +V F     AE  L + +  ++    +P R+ W+    S R++   +   IFV +L   + +  L +T S+ + ++    V+ D N   +KGYGFV F       RA+ +MNG+  + R
Sbjct:   10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGN---IFVKNLDKSINNKALYDTVSA-FGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 46/179 (25.70%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  172 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            +  + ++++G+L   + E  L   FS  GQV +++V R+  T +S GY +V + S    EK L+  + +++    +P R+ W+    + R+T      ++F+ +L   + +  L +TF++ + ++   KV  D   G +KGYGFV +      + A+  +NG+  + + + +    PKK
Sbjct:   44 HQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDHAIDNKALHDTFAA-FGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKK 215          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 46/182 (25.27%), Postives = 95/182 (52.20%), Query Frame = 1
Query:  163 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            N +   + ++++G+L   + E  L+  FS  GQV +++V R+  T +S GY +V + + A  E+ L+  + +L+    +P R+ W+    + R+T      ++F+ +L   + +  L +TF++ + ++   KV  D   G +KGYGFV +      + A+  +NG+  + + + +     KK
Sbjct:   42 NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDSAIDNKALHDTFAA-FGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 216          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 49/163 (30.06%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675
            ++++GDL   ++E+ L + F+    V N++V R+  T +S GY +V F +   A + ++S + +  P  D+P R+     S  D  T      ++F+ +L   + +  L ETFSS + ++   KV +D   GR+KGYGFV+F  E     A+ ++NG+  + +
Sbjct:   46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYA--PIRDRPIRI---MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSS-FGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDK 200          
The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ROC3_ARATH5.633e-1329.7831 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
PABP_PICGU5.633e-1326.97Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV1_HUMAN5.633e-1329.53ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
PABP_SCHPO7.357e-1326.59Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV2_RAT7.357e-1330.87ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
PAP1L_HUMAN1.255e-1227.61Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
PABP3_HUMAN1.255e-1227.13Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
PABP_PHANO1.639e-1225.70Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPOR1.639e-1225.27Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP5_ARATH1.639e-1230.06Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A08-B15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bp
GCGATGGCCATGATGCAACAGCAGCAGATGATGATGTATCCTCATCATTA
CATGCCGTACGGCGGCGGCGGTCACCCGTATTATCAGAACGGCGGCGGCG
TAAAGCAGCAGCAGCAGCAGCAACATGGATTGAGTAACGGAAAACAAAAC
GGATCTAATAATAATTTTACTAATGACGAGACTAAGACTATATGGATTGG
TGATTTGTTTCATTGGATGGACGAAACTTTTCTTCATAATTGTTTCTCAC
ATACTGGTCAGGTTGTAAATGTTAAAGTTATCCGCAATAAGCAAACTGGT
CAGTCAGAAGGGTATGGATTTGTTGAGTTCTATTCACGTGCTGCAGCTGA
GAAAGTTTTGCAGAGCTATAGTGGTTCTCTAATGCCAAATACTGACCAGC
CTTTCCGACTTAATTGGGCGACCTTTAGCGGCAGTGATAGACGAACAGAA
GCATGTTCTGATCTGTCTATATTTGTAGGAGATTTGGCTCCAGATGTAAC
TGATAGTATATTGCAGGAGACCTTTTCTAGTAAGTATCCATCTGTAAAAG
GAGCCAAAGTTATCATCGACTCGAATACTGGCCGTACAAAAGGTTACGGT
TTTGTTAGATTTGGTGATGAAAATGAGAGGTCAAGGGCCATGACCGAAAT
GAATGGTGTGTATTGTTCAAGTAGGCCGATGCGCATAGATGTTGCAACCC
CCAAAAAGGCTTCTGGATATCAACAACAGTATTCTTCACAAGCTCTTGTA
TTGGCTGGTGGACCTGGGTCAAATGGTGCTAGGGTCCAAGGTTCTCAATC
TGATGGCGAGTCCATAATGCGACTATATTTGTTGGGGCACTTGATTCTGA
TGTCA
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