CX046761

Overview
NameCX046761
Unique NameCX046761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046761_ssr60 microsatellite CX046761_ssr60:60..71. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046761_ssr104 microsatellite CX046761_ssr104:104..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10148 contig Csv1_Contig10148:379..1233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 49/166 (29.52%), Postives = 96/166 (57.83%), Query Frame = 1
Query:  190 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675
            ++I +L   +D   L++ FS  G +++ KV+ ++    S GYGFV F +  AA + +Q+ +G L+ N  + F  ++   S  +R  E  + +    ++++ +   D+ D  L+E FS+ + +    KV++D ++GR++G+GFV +G+  E  +A++EMNG   + R
Sbjct:  101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLL-NDRKVFVGHFK--SRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA-FGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259          

HSP 2 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 50/188 (26.60%), Postives = 90/188 (47.87%), Query Frame = 1
Query:  178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            E   ++I +    MD+  L   FS  G  ++VKV+ +  +G+S G+GFV + +   A+K +             Y G      ++   L          R      ++++V +L   + D  L++ F   Y ++  AKV+ +   G +KG+GFV F    E ++A+TEMNG   S++P+ + +A  K+
Sbjct:  189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.141e-12
Identity = 47/185 (25.41%), Postives = 94/185 (50.81%), Query Frame = 1
Query:  163 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 717
            NFT   + ++++GDL   + E  L   F+  G V N++V R+  T +S  Y +V +Y+ A AE+ L + + +  P   +  R+ W+    S R++   +   +F+ +L   +    L +TFS+ + ++   KV+ D     +KG+GFV +  +    +A+ ++NG+  + + + +      K  G
Sbjct:    4 NFT-PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNT--PIRGKACRIMWSQRDPSLRKSGVGN---VFIKNLDKGIDHKALYDTFSA-FGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERG 180          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.141e-12
Identity = 45/176 (25.57%), Postives = 92/176 (52.27%), Query Frame = 1
Query:  178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705
            +  ++++G+L   + E  L   F+  G V +V+V R+  T +S GY +V F+++A   + L+  + S  P  ++P R+ W+    + R+T A    +I++ +L P + +  L +TFS+ +  +   K+  D   G ++G+GFV +        A+  +NG+  + + + +    PK
Sbjct:   44 DNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYS--PIKERPCRIMWSQRDPALRKTGAG---NIYIKNLDPAIDNKALHDTFSA-FGQILSCKIATD-EFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPK 212          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.141e-12
Identity = 50/169 (29.59%), Postives = 84/169 (49.70%), Query Frame = 1
Query:  160 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT-GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS--DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657
            +N T D    + +  L   M +  L + F   G++ + K++R+K T GQS GYGFV +     AEK + + +G          RL   T   S  R  + S  D +++V  L   +T   L++ FS +Y  +  +++++D  TG ++G GF+RF    E   A+  +NG
Sbjct:   58 SNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 55/222 (24.77%), Postives = 103/222 (46.40%), Query Frame = 1
Query:  148 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDG 807
            +G  +N TN     + +  L   M +  L+  F   G +   +++R+ +TG S GY FV+F +   +++ ++S +G  + N  +  ++++A   G     E+  D +++V +L   +TD  L +T   KY  +    ++ D  TG+ +G  FVRF    E   A++ +N V    +S+P+ + +A     +          L+  GG G  G    G    G
Sbjct:  103 HGGGSNGTN-----LIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRN--KRLKVSYARPGG-----ESIKDTNLYVTNLPRTITDDQL-DTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAEEHGKAKAQHYMSQLGLIGGGGGGGGGGGGGGGGMGG 311          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 56/191 (29.32%), Postives = 90/191 (47.12%), Query Frame = 1
Query:  190 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT--------FSGSDRRT--------------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 696
            +++G+L   +D   L   F   G V  V+VI +K TG+S G+GFV   S +  E   Q ++G  +    +P R+N           FS   R +               A S   ++VG+L+  V D  L+  FS +   V+ A+VI D ++GR+KG+GFV +    E   A+  ++G     R +R+  A
Sbjct:   93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDG--RPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVE-ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 50/188 (26.60%), Postives = 94/188 (50.00%), Query Frame = 1
Query:  148 NGSNNNFTNDETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            NG   N  +    T +++G+L   + E  L   FS  G V +++V R+  T +S GY +V F + A  E+ ++  + SL+ N  +P R+ W+    + RRT      +IF+ +L   + +  L +TF++ + ++   KV   +N   + GYGFV +        A+  +NG+  + + + +    P+K
Sbjct:   34 NGEQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRN--RPCRIMWSQRDPALRRT---GQGNIFIKNLDAGIDNKALHDTFAA-FGNILSCKVA--TNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRK 213          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 47/178 (26.40%), Postives = 92/178 (51.69%), Query Frame = 1
Query:  175 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            + + ++++G+L   ++E  L   FS  GQV +++V R+  + +S GY +V ++     EK ++  + +  P   +P R+ W+    S RR+    D +IF+ +L P + +  L +TFS+ +  +   KV  D   G++K +GFV +        A+  +NG+  + R + +     KK
Sbjct:   49 ENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYN--PIEGRPCRIMWSQRDPSARRS---GDGNIFIKNLHPAIDNKALHDTFSA-FGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKK 219          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 44/180 (24.44%), Postives = 95/180 (52.78%), Query Frame = 1
Query:  148 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687
            + S++  ++  T ++++GDL   + E  L++ F+    + +V++ ++  +G+S  YG+  F SR  A   ++  + SL+    +  R+ W+  +   RR       ++FV +L   VT+++LQ+ F  K+ ++   KV      G+++GYGFV+F  E+    A+  +N    + + + +
Sbjct:   12 DASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLL--NGKMIRVMWSVRAPDARRNGVG---NVFVKNLPESVTNAVLQDMF-KKFGNIVSCKV-ATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 45/174 (25.86%), Postives = 92/174 (52.87%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            ++++G+L   + E  L+  FS  GQV +++V R+  T +S GY +V + + A  E+ L+  + +L+    +P R+ W+    + R+T      ++F+ +L   + +  L +TF++ + ++   KV  D   G +KGYGFV +      + A+  +NG+  + + + +     KK
Sbjct:   53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDAAIDNKALHDTFAA-FGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219          
The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
EPABA_XENLA1.639e-1229.52Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PAP1A_DICDI2.141e-1225.41Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
PABP_YARLI2.141e-1225.57Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV2_XENLA2.141e-1229.59ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
SXL_CERCA3.651e-1224.77Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]
ROC1_ARATH3.651e-1229.32Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
PABP_USTMA3.651e-1226.60Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANAL3.651e-1226.40Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPX_ARATH3.651e-1224.44Probable polyadenylate-binding protein At2g36660 O... [more]
PABP_NEOFI4.769e-1225.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A08-B15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bp
GCGATGGCCATGATGCAACAGCAGCAGATGATGATGTATCCTCATCATTA
CATGCCGTACGGCGGCGGCGGTCACCCGTATTATCAGAACGGCGGCGGCG
TAAAGCAGCAGCAGCAGCAGCAACATGGATTGAGTAACGGAAAACAAAAC
GGATCTAATAATAATTTTACTAATGACGAGACTAAGACTATATGGATTGG
TGATTTGTTTCATTGGATGGACGAAACTTTTCTTCATAATTGTTTCTCAC
ATACTGGTCAGGTTGTAAATGTTAAAGTTATCCGCAATAAGCAAACTGGT
CAGTCAGAAGGGTATGGATTTGTTGAGTTCTATTCACGTGCTGCAGCTGA
GAAAGTTTTGCAGAGCTATAGTGGTTCTCTAATGCCAAATACTGACCAGC
CTTTCCGACTTAATTGGGCGACCTTTAGCGGCAGTGATAGACGAACAGAA
GCATGTTCTGATCTGTCTATATTTGTAGGAGATTTGGCTCCAGATGTAAC
TGATAGTATATTGCAGGAGACCTTTTCTAGTAAGTATCCATCTGTAAAAG
GAGCCAAAGTTATCATCGACTCGAATACTGGCCGTACAAAAGGTTACGGT
TTTGTTAGATTTGGTGATGAAAATGAGAGGTCAAGGGCCATGACCGAAAT
GAATGGTGTGTATTGTTCAAGTAGGCCGATGCGCATAGATGTTGCAACCC
CCAAAAAGGCTTCTGGATATCAACAACAGTATTCTTCACAAGCTCTTGTA
TTGGCTGGTGGACCTGGGTCAAATGGTGCTAGGGTCCAAGGTTCTCAATC
TGATGGCGAGTCCATAATGCGACTATATTTGTTGGGGCACTTGATTCTGA
TGTCA
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