CX046761
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12 Identity = 49/166 (29.52%), Postives = 96/166 (57.83%), Query Frame = 1 Query: 190 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675 ++I +L +D L++ FS G +++ KV+ ++ S GYGFV F + AA + +Q+ +G L+ N + F ++ S +R E + + ++++ + D+ D L+E FS+ + + KV++D ++GR++G+GFV +G+ E +A++EMNG + R Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLL-NDRKVFVGHFK--SRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA-FGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259 HSP 2 Score: 70.8626 bits (172), Expect = 1.062e-11 Identity = 50/188 (26.60%), Postives = 90/188 (47.87%), Query Frame = 1 Query: 178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 E ++I + MD+ L FS G ++VKV+ + +G+S G+GFV + + A+K + Y G ++ L R ++++V +L + D L++ F Y ++ AKV+ + G +KG+GFV F E ++A+TEMNG S++P+ + +A K+ Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.141e-12 Identity = 47/185 (25.41%), Postives = 94/185 (50.81%), Query Frame = 1 Query: 163 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 717 NFT + ++++GDL + E L F+ G V N++V R+ T +S Y +V +Y+ A AE+ L + + + P + R+ W+ S R++ + +F+ +L + L +TFS+ + ++ KV+ D +KG+GFV + + +A+ ++NG+ + + + + K G Sbjct: 4 NFT-PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNT--PIRGKACRIMWSQRDPSLRKSGVGN---VFIKNLDKGIDHKALYDTFSA-FGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERG 180
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.141e-12 Identity = 45/176 (25.57%), Postives = 92/176 (52.27%), Query Frame = 1 Query: 178 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705 + ++++G+L + E L F+ G V +V+V R+ T +S GY +V F+++A + L+ + S P ++P R+ W+ + R+T A +I++ +L P + + L +TFS+ + + K+ D G ++G+GFV + A+ +NG+ + + + + PK Sbjct: 44 DNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYS--PIKERPCRIMWSQRDPALRKTGAG---NIYIKNLDPAIDNKALHDTFSA-FGQILSCKIATD-EFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPK 212
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.141e-12 Identity = 50/169 (29.59%), Postives = 84/169 (49.70%), Query Frame = 1 Query: 160 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT-GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS--DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657 +N T D + + L M + L + F G++ + K++R+K T GQS GYGFV + AEK + + +G RL T S R + S D +++V L +T L++ FS +Y + +++++D TG ++G GF+RF E A+ +NG Sbjct: 58 SNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNG---------LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12 Identity = 55/222 (24.77%), Postives = 103/222 (46.40%), Query Frame = 1 Query: 148 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDG 807 +G +N TN + + L M + L+ F G + +++R+ +TG S GY FV+F + +++ ++S +G + N + ++++A G E+ D +++V +L +TD L +T KY + ++ D TG+ +G FVRF E A++ +N V +S+P+ + +A + L+ GG G G G G Sbjct: 103 HGGGSNGTN-----LIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRN--KRLKVSYARPGG-----ESIKDTNLYVTNLPRTITDDQL-DTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAEEHGKAKAQHYMSQLGLIGGGGGGGGGGGGGGGGMGG 311
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12 Identity = 56/191 (29.32%), Postives = 90/191 (47.12%), Query Frame = 1 Query: 190 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT--------FSGSDRRT--------------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 696 +++G+L +D L F G V V+VI +K TG+S G+GFV S + E Q ++G + +P R+N FS R + A S ++VG+L+ V D L+ FS + V+ A+VI D ++GR+KG+GFV + E A+ ++G R +R+ A Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDG--RPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVE-ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12 Identity = 50/188 (26.60%), Postives = 94/188 (50.00%), Query Frame = 1 Query: 148 NGSNNNFTNDETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 NG N + T +++G+L + E L FS G V +++V R+ T +S GY +V F + A E+ ++ + SL+ N +P R+ W+ + RRT +IF+ +L + + L +TF++ + ++ KV +N + GYGFV + A+ +NG+ + + + + P+K Sbjct: 34 NGEQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRN--RPCRIMWSQRDPALRRT---GQGNIFIKNLDAGIDNKALHDTFAA-FGNILSCKVA--TNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRK 213
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12 Identity = 47/178 (26.40%), Postives = 92/178 (51.69%), Query Frame = 1 Query: 175 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 + + ++++G+L ++E L FS GQV +++V R+ + +S GY +V ++ EK ++ + + P +P R+ W+ S RR+ D +IF+ +L P + + L +TFS+ + + KV D G++K +GFV + A+ +NG+ + R + + KK Sbjct: 49 ENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYN--PIEGRPCRIMWSQRDPSARRS---GDGNIFIKNLHPAIDNKALHDTFSA-FGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKK 219
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12 Identity = 44/180 (24.44%), Postives = 95/180 (52.78%), Query Frame = 1 Query: 148 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 687 + S++ ++ T ++++GDL + E L++ F+ + +V++ ++ +G+S YG+ F SR A ++ + SL+ + R+ W+ + RR ++FV +L VT+++LQ+ F K+ ++ KV G+++GYGFV+F E+ A+ +N + + + + Sbjct: 12 DASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLL--NGKMIRVMWSVRAPDARRNGVG---NVFVKNLPESVTNAVLQDMF-KKFGNIVSCKV-ATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12 Identity = 45/174 (25.86%), Postives = 92/174 (52.87%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 ++++G+L + E L+ FS GQV +++V R+ T +S GY +V + + A E+ L+ + +L+ +P R+ W+ + R+T ++F+ +L + + L +TF++ + ++ KV D G +KGYGFV + + A+ +NG+ + + + + KK Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDAAIDNKALHDTFAA-FGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219 The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bpback to top |