CX046761

Overview
NameCX046761
Unique NameCX046761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046761_ssr60 microsatellite CX046761_ssr60:60..71. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046761_ssr104 microsatellite CX046761_ssr104:104..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10148 contig Csv1_Contig10148:379..1233. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 45/174 (25.86%), Postives = 92/174 (52.87%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            ++++G+L   + E  L+  FS  GQV +++V R+  T +S GY +V + + A  E+ L+  + +L+    +P R+ W+    + R+T      ++F+ +L   + +  L +TF++ + ++   KV  D   G +KGYGFV +      + A+  +NG+  + + + +     KK
Sbjct:   49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDAAIDNKALHDTFAA-FGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 215          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 45/174 (25.86%), Postives = 92/174 (52.87%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            ++++G+L   + E  L+  FS  GQV +++V R+  T +S GY +V + + A  E+ L+  + +L+    +P R+ W+    + R+T      ++F+ +L   + +  L +TF++ + ++   KV  D   G +KGYGFV +      + A+  +NG+  + + + +     KK
Sbjct:   55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDSAIDNKALHDTFAA-FGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 45/174 (25.86%), Postives = 92/174 (52.87%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708
            ++++G+L   + E  L+  FS  GQV +++V R+  T +S GY +V + + A  E+ L+  + +L+    +P R+ W+    + R+T      ++F+ +L   + +  L +TF++ + ++   KV  D   G +KGYGFV +      + A+  +NG+  + + + +     KK
Sbjct:   53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDAAIDNKALHDTFAA-FGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 64/219 (29.22%), Postives = 97/219 (44.29%), Query Frame = 1
Query:  151 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDG 807
            G  N+  + E+KT+ + +L +   E  L   F    +   +KV +N Q G+S+GY F+EF S   A++ L S +   +    +  RL      GS       S  ++FV  L+ D T+  L+E+F     SV+ A+++ D  TG +KG+GFV F  E +   A   M         + +D A PK   G             GG G  G R  G    G
Sbjct:  477 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEETLKESFDG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGR--------GGGRGGFGGRGGGRGGRG 676          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 64/219 (29.22%), Postives = 97/219 (44.29%), Query Frame = 1
Query:  151 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDG 807
            G  N+  + E+KT+ + +L +   E  L   F    +   +KV +N Q G+S+GY F+EF S   A++ L S +   +    +  RL      GS       S  ++FV  L+ D T+  L+E+F     SV+ A+++ D  TG +KG+GFV F  E +   A   M         + +D A PK   G             GG G  G R  G    G
Sbjct:  476 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEETLKESFDG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGR--------GGGRGGFGGRGGGRGGRG 675          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 64/219 (29.22%), Postives = 97/219 (44.29%), Query Frame = 1
Query:  151 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDG 807
            G  N+  + E+KT+ + +L +   E  L   F    +   +KV +N Q G+S+GY F+EF S   A++ L S +   +    +  RL      GS       S  ++FV  L+ D T+  L+E+F     SV+ A+++ D  TG +KG+GFV F  E +   A   M         + +D A PK   G             GG G  G R  G    G
Sbjct:  475 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEETLKESFDG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGR--------GGGRGGFGGRGGGRGGRG 674          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 47/172 (27.33%), Postives = 85/172 (49.42%), Query Frame = 1
Query:  148 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS--DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657
            NG+N    + +T  I +  L   M +    + F   G++ + K++R+K TGQS GYGFV +     A+K + + +G          +L   T   S  R  + S  D +++V  L   +    +++ F S+Y  +  +++++D  TG ++G GF+RF    E   A+  +NG
Sbjct:   23 NGTNGEADDSKTNLI-VNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNG---------LKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 183          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.228e-12
Identity = 43/163 (26.38%), Postives = 86/163 (52.76%), Query Frame = 1
Query:  187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675
            ++++GDL   + E  L+  FS  G ++++++ R+K T +S GY +V +     A++ L++ +  ++    +P R+ W+    S R++      ++F+ +L   + +  L   FS+ + ++   KV  D      KGYGFV F  +    RA+  MNG++ + R
Sbjct:    3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIFSA-FGNILSCKVACDEK--GPKGYGFVHFQKQESAERAIDVMNGMFLNYR 157          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.228e-12
Identity = 43/149 (28.86%), Postives = 76/149 (51.01%), Query Frame = 1
Query:  217 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657
            M +  L + FS  G+V + K+IR+K  G S GYGFV + +   AE+ + + +G          RL   T   S  R  +E   D ++++  L   +T   +++ F S++  +  ++V++D  TG ++G  F+RF   +E   A+T   G
Sbjct:   31 MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNG---------LRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169          
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 46/188 (24.47%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  160 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL----QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705
            +N T +E   +T++   L   +    L   FS  G+V +V++I ++ + +S+G  +VEF   ++    +    Q   G  +         N A    ++ +  +   + ++VG L  ++T+ +L+  F   +  ++  ++++DS TGR+KGYGF+ F D     +A+ ++NG   + RPM++   T +
Sbjct:  143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329          
The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PABP_ASPTN4.769e-1225.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPNC4.769e-1225.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPFU4.769e-1225.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
NUCL_PONAB4.769e-1229.22Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3[more]
NUCL_MACFA4.769e-1229.22Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3[more]
NUCL_HUMAN4.769e-1229.22Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3[more]
ELAV3_XENLA4.769e-1227.33ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
PAP1M_HUMAN6.228e-1226.38Polyadenylate-binding protein 1-like 2 OS=Homo sap... [more]
ELAV1_MOUSE6.228e-1228.86ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
RBM39_PONAB8.134e-1224.47RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A08-B15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bp
GCGATGGCCATGATGCAACAGCAGCAGATGATGATGTATCCTCATCATTA
CATGCCGTACGGCGGCGGCGGTCACCCGTATTATCAGAACGGCGGCGGCG
TAAAGCAGCAGCAGCAGCAGCAACATGGATTGAGTAACGGAAAACAAAAC
GGATCTAATAATAATTTTACTAATGACGAGACTAAGACTATATGGATTGG
TGATTTGTTTCATTGGATGGACGAAACTTTTCTTCATAATTGTTTCTCAC
ATACTGGTCAGGTTGTAAATGTTAAAGTTATCCGCAATAAGCAAACTGGT
CAGTCAGAAGGGTATGGATTTGTTGAGTTCTATTCACGTGCTGCAGCTGA
GAAAGTTTTGCAGAGCTATAGTGGTTCTCTAATGCCAAATACTGACCAGC
CTTTCCGACTTAATTGGGCGACCTTTAGCGGCAGTGATAGACGAACAGAA
GCATGTTCTGATCTGTCTATATTTGTAGGAGATTTGGCTCCAGATGTAAC
TGATAGTATATTGCAGGAGACCTTTTCTAGTAAGTATCCATCTGTAAAAG
GAGCCAAAGTTATCATCGACTCGAATACTGGCCGTACAAAAGGTTACGGT
TTTGTTAGATTTGGTGATGAAAATGAGAGGTCAAGGGCCATGACCGAAAT
GAATGGTGTGTATTGTTCAAGTAGGCCGATGCGCATAGATGTTGCAACCC
CCAAAAAGGCTTCTGGATATCAACAACAGTATTCTTCACAAGCTCTTGTA
TTGGCTGGTGGACCTGGGTCAAATGGTGCTAGGGTCCAAGGTTCTCAATC
TGATGGCGAGTCCATAATGCGACTATATTTGTTGGGGCACTTGATTCTGA
TGTCA
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