CX046761
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12 Identity = 45/174 (25.86%), Postives = 92/174 (52.87%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 ++++G+L + E L+ FS GQV +++V R+ T +S GY +V + + A E+ L+ + +L+ +P R+ W+ + R+T ++F+ +L + + L +TF++ + ++ KV D G +KGYGFV + + A+ +NG+ + + + + KK Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDAAIDNKALHDTFAA-FGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 215
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12 Identity = 45/174 (25.86%), Postives = 92/174 (52.87%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 ++++G+L + E L+ FS GQV +++V R+ T +S GY +V + + A E+ L+ + +L+ +P R+ W+ + R+T ++F+ +L + + L +TF++ + ++ KV D G +KGYGFV + + A+ +NG+ + + + + KK Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDSAIDNKALHDTFAA-FGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12 Identity = 45/174 (25.86%), Postives = 92/174 (52.87%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 708 ++++G+L + E L+ FS GQV +++V R+ T +S GY +V + + A E+ L+ + +L+ +P R+ W+ + R+T ++F+ +L + + L +TF++ + ++ KV D G +KGYGFV + + A+ +NG+ + + + + KK Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDAAIDNKALHDTFAA-FGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12 Identity = 64/219 (29.22%), Postives = 97/219 (44.29%), Query Frame = 1 Query: 151 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDG 807 G N+ + E+KT+ + +L + E L F + +KV +N Q G+S+GY F+EF S A++ L S + + + RL GS S ++FV L+ D T+ L+E+F SV+ A+++ D TG +KG+GFV F E + A M + +D A PK G GG G G R G G Sbjct: 477 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEETLKESFDG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGR--------GGGRGGFGGRGGGRGGRG 676
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12 Identity = 64/219 (29.22%), Postives = 97/219 (44.29%), Query Frame = 1 Query: 151 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDG 807 G N+ + E+KT+ + +L + E L F + +KV +N Q G+S+GY F+EF S A++ L S + + + RL GS S ++FV L+ D T+ L+E+F SV+ A+++ D TG +KG+GFV F E + A M + +D A PK G GG G G R G G Sbjct: 476 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEETLKESFDG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGR--------GGGRGGFGGRGGGRGGRG 675
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12 Identity = 64/219 (29.22%), Postives = 97/219 (44.29%), Query Frame = 1 Query: 151 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDG 807 G N+ + E+KT+ + +L + E L F + +KV +N Q G+S+GY F+EF S A++ L S + + + RL GS S ++FV L+ D T+ L+E+F SV+ A+++ D TG +KG+GFV F E + A M + +D A PK G GG G G R G G Sbjct: 475 GGKNSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG--RAIRLELQGPRGSPNARSQPSK-TLFVKGLSEDTTEETLKESFDG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGR--------GGGRGGFGGRGGGRGGRG 674
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12 Identity = 47/172 (27.33%), Postives = 85/172 (49.42%), Query Frame = 1 Query: 148 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS--DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657 NG+N + +T I + L M + + F G++ + K++R+K TGQS GYGFV + A+K + + +G +L T S R + S D +++V L + +++ F S+Y + +++++D TG ++G GF+RF E A+ +NG Sbjct: 23 NGTNGEADDSKTNLI-VNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNG---------LKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 183
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.228e-12 Identity = 43/163 (26.38%), Postives = 86/163 (52.76%), Query Frame = 1 Query: 187 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 675 ++++GDL + E L+ FS G ++++++ R+K T +S GY +V + A++ L++ + ++ +P R+ W+ S R++ ++F+ +L + + L FS+ + ++ KV D KGYGFV F + RA+ MNG++ + R Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIFSA-FGNILSCKVACDEK--GPKGYGFVHFQKQESAERAIDVMNGMFLNYR 157
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.228e-12 Identity = 43/149 (28.86%), Postives = 76/149 (51.01%), Query Frame = 1 Query: 217 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 657 M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G RL T S R +E D ++++ L +T +++ F S++ + ++V++D TG ++G F+RF +E A+T G Sbjct: 31 MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNG---------LRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169
BLAST of CX046761 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12 Identity = 46/188 (24.47%), Postives = 95/188 (50.53%), Query Frame = 1 Query: 160 NNFTNDE--TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL----QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 705 +N T +E +T++ L + L FS G+V +V++I ++ + +S+G +VEF ++ + Q G + N A ++ + + + ++VG L ++T+ +L+ F + ++ ++++DS TGR+KGYGF+ F D +A+ ++NG + RPM++ T + Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329 The following BLAST results are available for this feature:
BLAST of CX046761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046761 ID=CX046761; Name=CX046761; organism=Citrus sinensis; type=EST; length=855bpback to top |