CX046759 | Citrus Genome Database

Overview


Name	CX046759
Unique Name	CX046759
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	854

Libraries


Library Name	Type
Ruby Orange Developing Seed cDNA Library UCRCS09	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig661	contig	Csv1_Contig661:47..899.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.485e-53
Identity = 108/192 (56.25%), Postives = 130/192 (67.71%), Query Frame = 2

Query:  113 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            M++++WFY VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189

[Close]

BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_ASPOR (Small COPII coat GTPase sar1 OS=Aspergillus oryzae GN=sar1 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.245e-53
Identity = 108/192 (56.25%), Postives = 130/192 (67.71%), Query Frame = 2

Query:  113 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            M++++WFY VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189

[Close]

BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.245e-53
Identity = 107/192 (55.73%), Postives = 130/192 (67.71%), Query Frame = 2

Query:  113 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            M++++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189

[Close]

BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.238e-53
Identity = 111/192 (57.81%), Postives = 127/192 (66.15%), Query Frame = 2

Query:  113 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            M+L DWF  VLASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK             +VPFL+LGNKID   A  E EL+  LGL N TTGK    L +   RP+EVFM S+V +MGYGDGFKWLSQYI
Sbjct:    1 MWLFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELASVPFLILGNKIDASSAVGEMELKSALGLYN-TTGKDTGKLPEGQ-RPIEVFMVSVVMRMGYGDGFKWLSQYI 190

[Close]

BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_ASPTN (Small COPII coat GTPase sar1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sar1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.535e-53
Identity = 107/192 (55.73%), Postives = 130/192 (67.71%), Query Frame = 2

Query:  113 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            M++++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDYERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189

[Close]

BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNC (Small COPII coat GTPase SAR1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sar1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.535e-53
Identity = 108/192 (56.25%), Postives = 130/192 (67.71%), Query Frame = 2

Query:  113 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            M+L++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:    1 MWLINWFYDLLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189

[Close]

BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.442e-53
Identity = 108/192 (56.25%), Postives = 129/192 (67.19%), Query Frame = 2

Query:  113 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            M+L DWF  VL+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK             +VPFL+LGNKID+P A  E EL+  LGL N TTGK    L + + RP+EV+M S+V + GYG+GFKWLSQYI
Sbjct:    1 MWLFDWFQDVLSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELSHVPFLILGNKIDVPTAVGEMELKSALGLYN-TTGKDTGKLPEGS-RPIEVYMVSVVMRSGYGEGFKWLSQYI 190

[Close]

BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.233e-52
Identity = 105/192 (54.69%), Postives = 131/192 (68.23%), Query Frame = 2

Query:  113 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            M++++WFY VL+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   +RF E+K              VPF++LGNKID P A SEEELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:    1 MWIINWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEELAKVPFVILGNKIDHPEAISEEELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189

[Close]

BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_TRIRE (Small COPII coat GTPase sar1 OS=Trichoderma reesei GN=sar1 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.747e-52
Identity = 103/192 (53.65%), Postives = 130/192 (67.71%), Query Frame = 2

Query:  113 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            M++++WFY VL+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERF E+K              VPF++LGNKID P A SE+ELR+ LGL   TTGKG+V L    +RP+E+FMCS+V + GYGDG +WLS Y+
Sbjct:    1 MWIVNWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELAIGNVRFNTFDLGGHQQARRIWRDYFPDVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGRVQL--EGIRPIELFMCSVVMRQGYGDGIRWLSNYV 189

[Close]

BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_LODEL (Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus GN=SAR1 PE=3 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.747e-52
Identity = 107/192 (55.73%), Postives = 126/192 (65.62%), Query Frame = 2

Query:  113 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            M++ DWF  +LASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK              VPF++LGNKID+P A  E EL+  LGL N TTGK    L +   RP+EVFM S+V + GYGD FKWLSQYI
Sbjct:    1 MWIFDWFQDILASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADSERFAESKAELESLFKIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPEGQ-RPIEVFMVSVVMRSGYGDAFKWLSQYI 190

The following BLAST results are available for this feature:

BLAST of CX046759 vs. ExPASy Swiss-Prot

BLAST of CX046759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50


Match Name	E-value	Identity	Description
SAR1_ASPCL	2.485e-53	56.25	Small COPII coat GTPase sar1 OS=Aspergillus clavat...	[more]
SAR1_ASPOR	3.245e-53	56.25	Small COPII coat GTPase sar1 OS=Aspergillus oryzae...	[more]
SAR1_ASPFU	3.245e-53	55.73	Small COPII coat GTPase sar1 OS=Aspergillus fumiga...	[more]
SAR1_DEBHA	4.238e-53	57.81	Small COPII coat GTPase SAR1 OS=Debaryomyces hanse...	[more]
SAR1_ASPTN	5.535e-53	55.73	Small COPII coat GTPase sar1 OS=Aspergillus terreu...	[more]
SAR1_ASPNC	5.535e-53	56.25	Small COPII coat GTPase SAR1 OS=Aspergillus niger ...	[more]
SAR1_PICST	9.442e-53	56.25	Small COPII coat GTPase SAR1 OS=Pichia stipitis GN...	[more]
SAR1_MAGGR	1.233e-52	54.69	Small COPII coat GTPase SAR1 OS=Magnaporthe grisea...	[more]
SAR1_TRIRE	2.747e-52	53.65	Small COPII coat GTPase sar1 OS=Trichoderma reesei...	[more]
SAR1_LODEL	2.747e-52	55.73	Small COPII coat GTPase SAR1 OS=Lodderomyces elong...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS09_10A07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A07-B13-1-5.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX046759 ID=CX046759; Name=CX046759; organism=Citrus sinensis; type=EST; length=854bp
TCAAATCGAAACAGAGGCCTTGAATTGGACGATCTGATTCGTTCTCAGCC
TTAGATCGTCGTAAATTCAAGCTCGATCCGTTTTCGTTTCTAATTTGTCT
ACCGATAAAGCCATGTTTCTCCTCGACTGGTTCTACGGCGTGCTGGCCTC
CCTCGGTCTTTGGCAGAAAGAGGCCAAGATCTTGTTTTTAGGGCTTGATA
ATGCTGGAAAAACAACGTTGCTTCACATGTTGAAAGATGAGAGATTGGTT
CAACATCAGCCAACACAGTATCCCACATCGGAAGAGCTTAGTATTGGGAA
AATTAAGTTCAAGGCGTTTGATTTGGGAGGCCATCAGATTGCTAGGAGAG
TCTGGAAGGATTACTATGCGAAGGTTGATGCTGTGGTATACCTAGTGGAT
GCCTATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAACTGGATGCACT
CCTTTCTGATGAGGCATTGGCCAATGTTCCTTTTCTTGTGTTAGGAAACA
AGATTGACATCCCTTATGCTGCTTCTGAGGAAGAGTTGCGTTACCACCTT
GGCCTATCAAATTTCACCACTGGGAAGGGGAAGGTTAATCTAGCGGACTC
AAATGTCCGTCCACTGGAGGTGTTTATGTGTAGCATAGTTCGCAAAATGG
GATATGGTGATGGTTTCAAATGGCTCTCTCAATACATTAAGTAGGGTAAT
GCTCAGGAAGTGTTATAGAAGTAATGCAGATTTCAAAATTTCACCCATGC
CTACTACACCCTGTTTCACCAAAAAAAAAATTGTGTTTATCTACTTGTTT
GATCTTTTAGTCTGTTAGTGGGACTTGAACCAGAGGTACTGTGTTTTGAG
TCTG