CX046759

Overview
NameCX046759
Unique NameCX046759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig661 contig Csv1_Contig661:47..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.967e-51
Identity = 103/195 (52.82%), Postives = 125/195 (64.10%), Query Frame = 2
Query:  116 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG ++L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.967e-51
Identity = 104/195 (53.33%), Postives = 125/195 (64.10%), Query Frame = 2
Query:  116 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.837e-51
Identity = 105/192 (54.69%), Postives = 130/192 (67.71%), Query Frame = 2
Query:  113 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            MFL DWF+ VL+ LGL+ K AKILFLGLDNAGKTTLL +LKD RL  + PT +PTSEEL++G I+FKAFDLGGH+ ARR+W                   +RF ESKK            NVPFL+LGNK+DI    SEE+ R  LGL+  TTGKGK  L  + VRP+EVFMCS+V++ GY +GF+WL+ Y+
Sbjct:    1 MFLFDWFWNVLSFLGLYNKNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELAMGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDELANVPFLILGNKVDIG-NTSEEKFRASLGLTQ-TTGKGKTTL--NGVRPIEVFMCSVVKRYGYAEGFRWLANYL 188          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_PICGU (Small COPII coat GTPase SAR1 OS=Pichia guilliermondii GN=SAR1 PE=3 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.969e-50
Identity = 106/192 (55.21%), Postives = 124/192 (64.58%), Query Frame = 2
Query:  113 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            M++ DWF  VLASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ER AESK              VPFL+LGNKID   A  E EL+  LGL N TTGK    L +   RP+EVFM S+V +MGYG+GFKWLS +I
Sbjct:    1 MWIFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERLAESKAELESLFRIEELSQVPFLILGNKIDKSTAIGEMELKSALGLYN-TTGKDVTKLPEGQ-RPIEVFMVSVVMRMGYGEGFKWLSSFI 190          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.728e-50
Identity = 102/192 (53.12%), Postives = 125/192 (65.10%), Query Frame = 2
Query:  113 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            M+L  WFY +L++LGL  K  K+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEELS+G +KF  FDLGGHQ ARR+W                   ER  E+K              VPF+VLGNKID P A SE+ELR  LGL   TTGKG+V L    +RP+EVFMCS+V + GYG+  +WLSQY+
Sbjct:    1 MWLWSWFYDILSNLGLLNKHGKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALLSMEELAKVPFVVLGNKIDHPEAVSEDELRQRLGLWQ-TTGKGRVPL--EGIRPIEVFMCSVVMRQGYGEAIRWLSQYV 189          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.771e-50
Identity = 102/195 (52.31%), Postives = 123/195 (63.08%), Query Frame = 2
Query:  116 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            F+ +W Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.771e-50
Identity = 102/195 (52.31%), Postives = 123/195 (63.08%), Query Frame = 2
Query:  116 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            F+ +W Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1A_PIG (GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.667e-49
Identity = 102/195 (52.31%), Postives = 123/195 (63.08%), Query Frame = 2
Query:  116 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            F+ +W Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1A_BOVIN (GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.667e-49
Identity = 102/195 (52.31%), Postives = 123/195 (63.08%), Query Frame = 2
Query:  116 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            F+ +W Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.411e-48
Identity = 94/191 (49.21%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  116 FLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            FL DWF GVL  LGL  K+ K++FLGLDNAGKTTLLHMLKD+R+ QH PT +PTSE++S+G I F  +DLGGH  ARRVW                   ER  ES+             +VP L+LGNKID P A SE++L++ L + +  TGKG V+  +   RP+EVFMCS++++ GYG+G +WL QY+
Sbjct:    3 FLWDWFNGVLNMLGLANKKGKLVFLGLDNAGKTTLLHMLKDDRIAQHVPTLHPTSEQMSLGGISFTTYDLGGHAQARRVWKDYFPAVDAVVFLIDVADAERMQESRVELESLLQDEQIASVPVLILGNKIDKPGALSEDQLKWQLNIQHMCTGKGDVSRNEMASRPMEVFMCSVLQRQGYGEGIRWLGQYL 193          
The following BLAST results are available for this feature:
BLAST of CX046759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SAR1B_HUMAN3.967e-5152.82GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
SAR1B_CRIGR3.967e-5153.33GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]
SAR1A_DICDI8.837e-5154.69GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]
SAR1_PICGU1.969e-5055.21Small COPII coat GTPase SAR1 OS=Pichia guilliermon... [more]
SAR1_NEUCR5.728e-5053.13Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1A_PONAB9.771e-5052.31GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_HUMAN9.771e-5052.31GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]
SAR1A_PIG1.667e-4952.31GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A P... [more]
SAR1A_BOVIN1.667e-4952.31GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A P... [more]
SAR1_CAEEL1.411e-4849.21GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A07-B13-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046759 ID=CX046759; Name=CX046759; organism=Citrus sinensis; type=EST; length=854bp
TCAAATCGAAACAGAGGCCTTGAATTGGACGATCTGATTCGTTCTCAGCC
TTAGATCGTCGTAAATTCAAGCTCGATCCGTTTTCGTTTCTAATTTGTCT
ACCGATAAAGCCATGTTTCTCCTCGACTGGTTCTACGGCGTGCTGGCCTC
CCTCGGTCTTTGGCAGAAAGAGGCCAAGATCTTGTTTTTAGGGCTTGATA
ATGCTGGAAAAACAACGTTGCTTCACATGTTGAAAGATGAGAGATTGGTT
CAACATCAGCCAACACAGTATCCCACATCGGAAGAGCTTAGTATTGGGAA
AATTAAGTTCAAGGCGTTTGATTTGGGAGGCCATCAGATTGCTAGGAGAG
TCTGGAAGGATTACTATGCGAAGGTTGATGCTGTGGTATACCTAGTGGAT
GCCTATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAACTGGATGCACT
CCTTTCTGATGAGGCATTGGCCAATGTTCCTTTTCTTGTGTTAGGAAACA
AGATTGACATCCCTTATGCTGCTTCTGAGGAAGAGTTGCGTTACCACCTT
GGCCTATCAAATTTCACCACTGGGAAGGGGAAGGTTAATCTAGCGGACTC
AAATGTCCGTCCACTGGAGGTGTTTATGTGTAGCATAGTTCGCAAAATGG
GATATGGTGATGGTTTCAAATGGCTCTCTCAATACATTAAGTAGGGTAAT
GCTCAGGAAGTGTTATAGAAGTAATGCAGATTTCAAAATTTCACCCATGC
CTACTACACCCTGTTTCACCAAAAAAAAAATTGTGTTTATCTACTTGTTT
GATCTTTTAGTCTGTTAGTGGGACTTGAACCAGAGGTACTGTGTTTTGAG
TCTG
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