CX046759

Overview
NameCX046759
Unique NameCX046759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.843e-48
Identity = 101/195 (51.79%), Postives = 122/195 (62.56%), Query Frame = 2
Query:  116 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            F+ +W Y     VL  LGL++K  K++FLGLDNAGKTTLL MLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLQMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIKGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.105e-48
Identity = 103/190 (54.21%), Postives = 119/190 (62.63%), Query Frame = 2
Query:  119 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            L  WF  +L+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++             NVPF VLGNKID P A SE ELR  LGL N TTG  K+       RP+E+FMCS+V K GY + FKWLS+YI
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHLQARRLWKDYFPEVNGIVFLVDAADPERFNEARIELDALFQIKELDNVPFAVLGNKIDSPSAVSETELRAALGLMN-TTGYTKI----EGQRPIELFMCSVVMKSGYSEAFKWLSEYI 190          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 7.002e-48
Identity = 101/185 (54.59%), Postives = 121/185 (65.41%), Query Frame = 2
Query:  134 YGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            + VL+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEELSIG +KF  FDLGGH  ARR+W                   ER  ESK             N PF++LGNKID P A SE++LR  LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:    4 WDVLSSLGLMNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAELDALLAMEELKNTPFVILGNKIDHPEAVSEDQLRATLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 185          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_YEAST (Small COPII coat GTPase SAR1 OS=Saccharomyces cerevisiae GN=SAR1 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.928e-47
Identity = 101/190 (53.16%), Postives = 120/190 (63.16%), Query Frame = 2
Query:  119 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            +  WF  VLASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++             +VPF++LGNKID P A SE ELR  LGL N TTG  ++       RP+EVFMCS+V + GY + F+WLSQYI
Sbjct:    6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRI----EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_ASHGO (Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.742e-47
Identity = 100/190 (52.63%), Postives = 119/190 (62.63%), Query Frame = 2
Query:  119 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            L  WF  +L+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++              VPF++LGNKID P A SE ELR  LGL N TTG  ++       RP+E+FMCS+V K GY + F+WLSQYI
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGSIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADSERFNEARVELDALFQIPELKTVPFVILGNKIDAPSAVSETELRAALGLLN-TTGDARI----EGQRPVELFMCSVVMKSGYLEAFQWLSQYI 190          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.118e-45
Identity = 99/187 (52.94%), Postives = 118/187 (63.10%), Query Frame = 2
Query:  128 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            WF  VLASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   +RF E++             +VPF++LGNKID   A SE ELR  LGL N TTG  ++       RP+EVFMCS+V + GY + F+WLSQYI
Sbjct:    8 WFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHVQARRLWKDYFPEVNGIVFLVDSADPDRFDEARVELDALFNITELKDVPFVILGNKIDAANAVSEAELRSALGLLN-TTGSQRI----EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 189          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.348e-41
Identity = 85/188 (45.21%), Postives = 113/188 (60.11%), Query Frame = 2
Query:  125 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 688
            DWF   L+ LGL++K+A I+F+GLDNAGK+TLL MLK+       PTQ PTS+EL +G I+FK FDLGGH++AR++W                    RF ES++              P L+L NK+DI  A S E +    G+ +  TGKG  NL  S+ RPLEVF CS++ + GY DGFKWLS+Y+
Sbjct:    5 DWFKSALSFLGLYKKKATIVFVGLDNAGKSTLLAMLKNSATTTVAPTQQPTSQELVMGSIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHDLATTPILILSNKVDIQTAVSMETMVQSFGIQHLLTGKGGSNLR-SDQRPLEVFPCSVINRFGYTDGFKWLSKYL 191          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.969e-23
Identity = 67/191 (35.08%), Postives = 89/191 (46.60%), Query Frame = 2
Query:  113 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW-XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQ 682
            MFL+DWFY +   LG ++KEAKI+ +GL NAGKTTLLH+L    L  H PT  P +E  + G + FKA+DLGG Q  R +W                        ESK               P L+LG+K D     + E L   L +  F  G     L +SN  P ++ M S + + G  D   WL +
Sbjct:    1 MFLVDWFYNMFLWLGFFKKEAKIVIIGLGNAGKTTLLHLLVTGSLKSHIPTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQYVPDSKTIIVFMVDSSDYNSIIESKSEIHDILGDEHLSQSPLLILGSKCDAKGHHNRENLIDLLDIRRFELG-----LNNSNNVPFDLIMTSSITRYGITDMLNWLDK 186          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.600e-13
Identity = 57/193 (29.53%), Postives = 82/193 (42.49%), Query Frame = 2
Query:  158 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLAD-SNVRPLEVFMCSIVRKMG------YGDGFKWLSQYIK*GNAQEVL 715
            L+ K + ILFLG+DNAGKTTL++ LK +    + PT +P++  + IG +K +  DLGGH  AR  W                   ERF E ++              P +VL NKID+     E     +   S  +   G  N  D    + +++F  +I               FKWL   I   N +E L
Sbjct:   31 LFGKPSSILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVRE--AYETVLSLEKRAPVVVLMNKIDLEGHTPETAEADYQWKSWLSQETGIENQEDPERGQVVKIFYVTITSGSANSITGPLARAFKWLEAMITYNNKKESL 221          
BLAST of CX046759 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.779e-12
Identity = 50/176 (28.41%), Postives = 73/176 (41.48%), Query Frame = 2
Query:  167 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ-YPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 691
            +E +IL LGLDNAGKTT+L  L  E +    PT+ +      ++G I+   +D+GG +  R  W                   +RF E                VP L+  NK D+  AAS EE+              K+NL     R   +  CS ++  G  DG  W++  +K
Sbjct:   16 REIRILLLGLDNAGKTTILKQLSSEDVQHVTPTKGFNVKTVAAMGDIRLNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKVPVLIFANKQDLVTAASSEEI------------TRKLNLDLLRDRTWHIQACSALKNEGINDGITWVASNLK 179          
The following BLAST results are available for this feature:
BLAST of CX046759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SAR1A_MOUSE1.843e-4851.79GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
SAR1_KLULA4.105e-4854.21Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
SAR1_PHANO7.002e-4854.59Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
SAR1_YEAST5.928e-4753.16Small COPII coat GTPase SAR1 OS=Saccharomyces cere... [more]
SAR1_ASHGO7.742e-4752.63Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN... [more]
SAR1_CANGA1.118e-4552.94Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]
SAR1_GIALA6.348e-4145.21GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
SAR1B_DICDI5.969e-2335.08GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]
SAR1_ENCCU5.600e-1329.53Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]
ARL3_CAEEL2.779e-1228.41ADP-ribosylation factor-like protein 3 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A07-B13-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046759 ID=CX046759; Name=CX046759; organism=Citrus sinensis; type=EST; length=854bp
TCAAATCGAAACAGAGGCCTTGAATTGGACGATCTGATTCGTTCTCAGCC
TTAGATCGTCGTAAATTCAAGCTCGATCCGTTTTCGTTTCTAATTTGTCT
ACCGATAAAGCCATGTTTCTCCTCGACTGGTTCTACGGCGTGCTGGCCTC
CCTCGGTCTTTGGCAGAAAGAGGCCAAGATCTTGTTTTTAGGGCTTGATA
ATGCTGGAAAAACAACGTTGCTTCACATGTTGAAAGATGAGAGATTGGTT
CAACATCAGCCAACACAGTATCCCACATCGGAAGAGCTTAGTATTGGGAA
AATTAAGTTCAAGGCGTTTGATTTGGGAGGCCATCAGATTGCTAGGAGAG
TCTGGAAGGATTACTATGCGAAGGTTGATGCTGTGGTATACCTAGTGGAT
GCCTATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAACTGGATGCACT
CCTTTCTGATGAGGCATTGGCCAATGTTCCTTTTCTTGTGTTAGGAAACA
AGATTGACATCCCTTATGCTGCTTCTGAGGAAGAGTTGCGTTACCACCTT
GGCCTATCAAATTTCACCACTGGGAAGGGGAAGGTTAATCTAGCGGACTC
AAATGTCCGTCCACTGGAGGTGTTTATGTGTAGCATAGTTCGCAAAATGG
GATATGGTGATGGTTTCAAATGGCTCTCTCAATACATTAAGTAGGGTAAT
GCTCAGGAAGTGTTATAGAAGTAATGCAGATTTCAAAATTTCACCCATGC
CTACTACACCCTGTTTCACCAAAAAAAAAATTGTGTTTATCTACTTGTTT
GATCTTTTAGTCTGTTAGTGGGACTTGAACCAGAGGTACTGTGTTTTGAG
TCTG
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