CX046758

Overview
NameCX046758
Unique NameCX046758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig661 contig Csv1_Contig661:342..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.654e-26
Identity = 62/127 (48.82%), Postives = 74/127 (58.27%), Query Frame = -1
Query:  368 FKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 748
            F  FDLGGH  ARRVW                   ER  ESK+           ANVP L+LGNKID P A  EE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   71 FTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.654e-26
Identity = 62/127 (48.82%), Postives = 74/127 (58.27%), Query Frame = -1
Query:  368 FKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 748
            F  FDLGGH  ARRVW                   ER  ESK+           ANVP L+LGNKID P A  EE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   71 FTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.654e-26
Identity = 62/127 (48.82%), Postives = 74/127 (58.27%), Query Frame = -1
Query:  368 FKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 748
            F  FDLGGH  ARRVW                   ER  ESK+           ANVP L+LGNKID P A  EE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   71 FTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_EMENI (Small COPII coat GTPase sar1 OS=Emericella nidulans GN=sar1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.160e-26
Identity = 65/131 (49.62%), Postives = 77/131 (58.78%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G  +F  FDLGGHQ ARR+W                   ERF ESK            + VPFLVLGNKID P A  E+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   62 GNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLVLGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.160e-26
Identity = 61/127 (48.03%), Postives = 74/127 (58.27%), Query Frame = -1
Query:  368 FKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 748
            F  FDLGGH  ARRVW                   ER  ESK+           ANVP L+LGNKID P A  EE LR   GL   TTGKG ++L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   71 FTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.160e-26
Identity = 62/127 (48.82%), Postives = 74/127 (58.27%), Query Frame = -1
Query:  368 FKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 748
            F  FDLGGH  ARRVW                   ER  ESK+           ANVP L+LGNKID P A  EE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   71 FTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.822e-26
Identity = 65/131 (49.62%), Postives = 77/131 (58.78%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G  +F  FDLGGHQ ARR+W                   ERF ESK            A VPFL+LGNKID P A  E+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   62 GNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.822e-26
Identity = 63/131 (48.09%), Postives = 78/131 (59.54%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G ++F  FDLGGHQ ARR+W                   +RF E+K            A VPF++LGNKID P A  EEELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   62 GNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEELAKVPFVILGNKIDHPEAISEEELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_ASPTN (Small COPII coat GTPase sar1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sar1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.822e-26
Identity = 65/131 (49.62%), Postives = 77/131 (58.78%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G  +F  FDLGGHQ ARR+W                   ERF ESK            A VPFL+LGNKID P A  E+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   62 GNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDYERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_ASPOR (Small COPII coat GTPase sar1 OS=Aspergillus oryzae GN=sar1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.822e-26
Identity = 65/131 (49.62%), Postives = 77/131 (58.78%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G  +F  FDLGGHQ ARR+W                   ERF ESK            A VPFL+LGNKID P A  E+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   62 GNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
The following BLAST results are available for this feature:
BLAST of CX046758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
SAR1B_PIG1.654e-2648.82GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]
SAR1B_MOUSE1.654e-2648.82GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]
SAR1B_BOVIN1.654e-2648.82GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]
SAR1_EMENI2.160e-2649.62Small COPII coat GTPase sar1 OS=Emericella nidulan... [more]
SAR1B_HUMAN2.160e-2648.03GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
SAR1B_CRIGR2.160e-2648.82GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]
SAR1_NEOFI2.822e-2649.62Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]
SAR1_MAGGR2.822e-2648.09Small COPII coat GTPase SAR1 OS=Magnaporthe grisea... [more]
SAR1_ASPTN2.822e-2649.62Small COPII coat GTPase sar1 OS=Aspergillus terreu... [more]
SAR1_ASPOR2.822e-2649.62Small COPII coat GTPase sar1 OS=Aspergillus oryzae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A07-B13-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046758 ID=CX046758; Name=CX046758; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTTTAAGGGATGTTTTGAACTTGAAATTAACCCTTAA
CAAAATAATAACAAATAATAATTCTAATATCTGCTCCACAGCAAAACATG
ACAATAGGTGCAAGTAATTTGACAAAACTACAATACCAAATAATGACCTG
CTATCCACAAGTAAATTTTACAGAGCAGTAACATAACTACCACCTTCCAA
ACAGACTCAAAACACAGTACCTCTGGTTCAAGTCCCACTAACAGACTAAA
AAATCAAACAAGTAGATAAACACAATTTTTTTTTTGGTGAAACAGGGTGT
AGTAGGCATGGGTGAAATTTTGAAATCTGCATTACTTCTATAACACTTCC
TGAGCATTACCCTACTTAATGTATTGAGAGAGCCATTTGAAACCATCACC
ATATCCCATTTTGCGAACTATGCTACACATAAACACCTCCAGTGGACGGA
CATTTGAGTCCGCTAGATTAACCTTCCCCTTCCCAGTGGTGAAATTTGAT
AGGCCAAGGGGGTAACGCAACTCTTCCTCAAAAGCAGCATAAGGGATGTC
AATCTTGTTTCCTAACACAAGAAAAGGAACATTGGCCAATGCCTCATCAA
AAAGGAGTGCATCCAGTTCTTTCTTTGATTCTGCAAACCTCTCTTTGTCA
TAGGCATCCACTAGGTATACCACAGCATCAACCTTCGCATAGTAATCCTT
CCAGACTCTCCTAGCAATCTGATGGCCTCCCAAATCAAACGCCTTGAACT
TAATTTTCCC
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