CX046758

Overview
NameCX046758
Unique NameCX046758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig661 contig Csv1_Contig661:342..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNC (Small COPII coat GTPase SAR1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sar1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.822e-26
Identity = 65/131 (49.62%), Postives = 77/131 (58.78%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G  +F  FDLGGHQ ARR+W                   ERF ESK            A VPFL+LGNKID P A  E+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   62 GNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.822e-26
Identity = 65/131 (49.62%), Postives = 77/131 (58.78%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G  +F  FDLGGHQ ARR+W                   ERF ESK            A VPFL+LGNKID P A  E+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   62 GNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.822e-26
Identity = 64/131 (48.85%), Postives = 77/131 (58.78%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G  +F  FDLGGHQ ARR+W                   ERF ESK            + VPFL+LGNKID P A  E+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   62 GNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_TRIRE (Small COPII coat GTPase sar1 OS=Trichoderma reesei GN=sar1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.813e-26
Identity = 60/131 (45.80%), Postives = 77/131 (58.78%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G ++F  FDLGGHQ ARR+W                   ERF E+K            + VPF++LGNKID P A  E+ELR+ LGL   TTGKG+V L    +RP+E+FMCS+V + GYGDG +WLS Y+
Sbjct:   62 GNVRFNTFDLGGHQQARRIWRDYFPDVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGRVQL--EGIRPIELFMCSVVMRQGYGDGIRWLSNYV 189          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.286e-26
Identity = 63/131 (48.09%), Postives = 82/131 (62.60%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G I+FKAFDLGGH+ ARR+W                  ++RF ESKK           ANVPFL+LGNK+DI   + EE+ R  LGL+  TTGKGK  L  + VRP+EVFMCS+V++ GY +GF+WL+ Y+
Sbjct:   62 GNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDELANVPFLILGNKVDIGNTS-EEKFRASLGLTQ-TTGKGKTTL--NGVRPIEVFMCSVVKRYGYAEGFRWLANYL 188          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.389e-25
Identity = 60/127 (47.24%), Postives = 72/127 (56.69%), Query Frame = -1
Query:  368 FKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 748
            F  FDLGGH+ ARRVW                    R  ESK            +NVP L+LGNKID   A  EE+LR   GL   TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:   71 FTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.389e-25
Identity = 60/127 (47.24%), Postives = 72/127 (56.69%), Query Frame = -1
Query:  368 FKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 748
            F  FDLGGH+ ARRVW                    R  ESK            +NVP L+LGNKID   A  EE+LR   GL   TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:   71 FTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.120e-25
Identity = 63/131 (48.09%), Postives = 78/131 (59.54%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G ++F  FDLGGHQ ARR+W                   ERFAESK            ++VPFL+LGNKID+P A  E EL+  LGL N TTGK    L + + RP+EV+M S+V + GYG+GFKWLSQYI
Sbjct:   62 GSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELSHVPFLILGNKIDVPTAVGEMELKSALGLYN-TTGKDTGKLPEGS-RPIEVYMVSVVMRSGYGEGFKWLSQYI 190          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.120e-25
Identity = 66/131 (50.38%), Postives = 76/131 (58.02%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G ++F  FDLGGHQ ARR+W                   ERFAESK            A+VPFL+LGNKID   A  E EL+  LGL N TTGK    L +   RP+EVFM S+V +MGYGDGFKWLSQYI
Sbjct:   62 GSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELASVPFLILGNKIDASSAVGEMELKSALGLYN-TTGKDTGKLPEGQ-RPIEVFMVSVVMRMGYGDGFKWLSQYI 190          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.120e-25
Identity = 61/130 (46.92%), Postives = 76/130 (58.46%), Query Frame = -1
Query:  371 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 760
            G ++F  FDLGGHQ ARR+W                   ERF E+K            + VPF+VLGNKID P A  E+ELR+ LG+   TTGKGKV L    +RP+EVFMCS+V + GYGDG +WLS +
Sbjct:   62 GNVRFTTFDLGGHQQARRLWKDYFPEVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVVLGNKIDHPDAVSEDELRHQLGMYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGDGIRWLSHF 188          
The following BLAST results are available for this feature:
BLAST of CX046758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
SAR1_ASPNC2.822e-2649.62Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_ASPFU2.822e-2649.62Small COPII coat GTPase sar1 OS=Aspergillus fumiga... [more]
SAR1_ASPCL2.822e-2648.85Small COPII coat GTPase sar1 OS=Aspergillus clavat... [more]
SAR1_TRIRE4.813e-2645.80Small COPII coat GTPase sar1 OS=Trichoderma reesei... [more]
SAR1A_DICDI6.286e-2648.09GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]
SAR1A_PONAB2.389e-2547.24GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_HUMAN2.389e-2547.24GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]
SAR1_PICST3.120e-2548.09Small COPII coat GTPase SAR1 OS=Pichia stipitis GN... [more]
SAR1_DEBHA3.120e-2550.38Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]
SAR1_CHAGB3.120e-2546.92Small COPII coat GTPase SAR1 OS=Chaetomium globosu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A07-B13-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046758 ID=CX046758; Name=CX046758; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTTTAAGGGATGTTTTGAACTTGAAATTAACCCTTAA
CAAAATAATAACAAATAATAATTCTAATATCTGCTCCACAGCAAAACATG
ACAATAGGTGCAAGTAATTTGACAAAACTACAATACCAAATAATGACCTG
CTATCCACAAGTAAATTTTACAGAGCAGTAACATAACTACCACCTTCCAA
ACAGACTCAAAACACAGTACCTCTGGTTCAAGTCCCACTAACAGACTAAA
AAATCAAACAAGTAGATAAACACAATTTTTTTTTTGGTGAAACAGGGTGT
AGTAGGCATGGGTGAAATTTTGAAATCTGCATTACTTCTATAACACTTCC
TGAGCATTACCCTACTTAATGTATTGAGAGAGCCATTTGAAACCATCACC
ATATCCCATTTTGCGAACTATGCTACACATAAACACCTCCAGTGGACGGA
CATTTGAGTCCGCTAGATTAACCTTCCCCTTCCCAGTGGTGAAATTTGAT
AGGCCAAGGGGGTAACGCAACTCTTCCTCAAAAGCAGCATAAGGGATGTC
AATCTTGTTTCCTAACACAAGAAAAGGAACATTGGCCAATGCCTCATCAA
AAAGGAGTGCATCCAGTTCTTTCTTTGATTCTGCAAACCTCTCTTTGTCA
TAGGCATCCACTAGGTATACCACAGCATCAACCTTCGCATAGTAATCCTT
CCAGACTCTCCTAGCAATCTGATGGCCTCCCAAATCAAACGCCTTGAACT
TAATTTTCCC
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