CX046758

Overview
NameCX046758
Unique NameCX046758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig661 contig Csv1_Contig661:342..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_PICGU (Small COPII coat GTPase SAR1 OS=Pichia guilliermondii GN=SAR1 PE=3 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 8.496e-23
Identity = 61/131 (46.56%), Postives = 73/131 (55.73%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G ++F  FDLGGHQ ARR+W                   ER AESK            + VPFL+LGNKID   A  E EL+  LGL N TTGK    L +   RP+EVFM S+V +MGYG+GFKWLS +I
Sbjct:   62 GSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERLAESKAELESLFRIEELSQVPFLILGNKIDKSTAIGEMELKSALGLYN-TTGKDVTKLPEGQ-RPIEVFMVSVVMRMGYGEGFKWLSSFI 190          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.893e-22
Identity = 61/131 (46.56%), Postives = 70/131 (53.44%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G IKF  FDLGGH  ARR+W                   ERF E++             NVPF VLGNKID P A  E ELR  LGL N TTG  K+       RP+E+FMCS+V K GY + FKWLS+YI
Sbjct:   65 GNIKFTTFDLGGHLQARRLWKDYFPEVNGIVFLVDAADPERFNEARIELDALFQIKELDNVPFAVLGNKIDSPSAVSETELRAALGLMN-TTGYTKIE----GQRPIELFMCSVVMKSGYSEAFKWLSEYI 190          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.228e-22
Identity = 53/131 (40.46%), Postives = 73/131 (55.73%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G I F  +DLGGH  ARRVW                   ER  ES+            A+VP L+LGNKID P A  E++L++ L + +  TGKG V+  +   RP+EVFMCS++++ GYG+G +WL QY+
Sbjct:   63 GGISFTTYDLGGHAQARRVWKDYFPAVDAVVFLIDVADAERMQESRVELESLLQDEQIASVPVLILGNKIDKPGALSEDQLKWQLNIQHMCTGKGDVSRNEMASRPMEVFMCSVLQRQGYGEGIRWLGQYL 193          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.227e-21
Identity = 53/131 (40.46%), Postives = 71/131 (54.20%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G I+FK FDLGGH++AR++W                    RF ES++           A  P L+L NK+DI  A   E +    G+ +  TGKG  NL  S+ RPLEVF CS++ + GY DGFKWLS+Y+
Sbjct:   62 GSIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHDLATTPILILSNKVDIQTAVSMETMVQSFGIQHLLTGKGGSNLR-SDQRPLEVFPCSVINRFGYTDGFKWLSKYL 191          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_ASHGO (Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.569e-21
Identity = 58/131 (44.27%), Postives = 70/131 (53.44%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G IKF  FDLGGH  ARR+W                   ERF E++              VPF++LGNKID P A  E ELR  LGL N TTG  ++       RP+E+FMCS+V K GY + F+WLSQYI
Sbjct:   65 GSIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADSERFNEARVELDALFQIPELKTVPFVILGNKIDAPSAVSETELRAALGLLN-TTGDARIE----GQRPVELFMCSVVMKSGYLEAFQWLSQYI 190          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_YEAST (Small COPII coat GTPase SAR1 OS=Saccharomyces cerevisiae GN=SAR1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.662e-21
Identity = 58/131 (44.27%), Postives = 71/131 (54.20%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G IKF  FDLGGH  ARR+W                   ERF E++             +VPF++LGNKID P A  E ELR  LGL N TTG  ++       RP+EVFMCS+V + GY + F+WLSQYI
Sbjct:   65 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRIE----GQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.731e-20
Identity = 56/131 (42.75%), Postives = 70/131 (53.44%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G IKF  FDLGGH  ARR+W                   +RF E++             +VPF++LGNKID   A  E ELR  LGL N TTG  ++       RP+EVFMCS+V + GY + F+WLSQYI
Sbjct:   64 GNIKFTTFDLGGHVQARRLWKDYFPEVNGIVFLVDSADPDRFDEARVELDALFNITELKDVPFVILGNKIDAANAVSEAELRSALGLLN-TTGSQRIE----GQRPVEVFMCSVVMRNGYLEAFQWLSQYI 189          
The following BLAST results are available for this feature:
BLAST of CX046758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
SAR1_PICGU8.496e-2346.56Small COPII coat GTPase SAR1 OS=Pichia guilliermon... [more]
SAR1_KLULA1.893e-2246.56Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
SAR1_CAEEL3.228e-2240.46GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]
SAR1_GIALA1.227e-2140.46GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
SAR1_ASHGO3.569e-2144.27Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN... [more]
SAR1_YEAST4.662e-2144.27Small COPII coat GTPase SAR1 OS=Saccharomyces cere... [more]
SAR1_CANGA6.731e-2042.75Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A07-B13-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046758 ID=CX046758; Name=CX046758; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTTTAAGGGATGTTTTGAACTTGAAATTAACCCTTAA
CAAAATAATAACAAATAATAATTCTAATATCTGCTCCACAGCAAAACATG
ACAATAGGTGCAAGTAATTTGACAAAACTACAATACCAAATAATGACCTG
CTATCCACAAGTAAATTTTACAGAGCAGTAACATAACTACCACCTTCCAA
ACAGACTCAAAACACAGTACCTCTGGTTCAAGTCCCACTAACAGACTAAA
AAATCAAACAAGTAGATAAACACAATTTTTTTTTTGGTGAAACAGGGTGT
AGTAGGCATGGGTGAAATTTTGAAATCTGCATTACTTCTATAACACTTCC
TGAGCATTACCCTACTTAATGTATTGAGAGAGCCATTTGAAACCATCACC
ATATCCCATTTTGCGAACTATGCTACACATAAACACCTCCAGTGGACGGA
CATTTGAGTCCGCTAGATTAACCTTCCCCTTCCCAGTGGTGAAATTTGAT
AGGCCAAGGGGGTAACGCAACTCTTCCTCAAAAGCAGCATAAGGGATGTC
AATCTTGTTTCCTAACACAAGAAAAGGAACATTGGCCAATGCCTCATCAA
AAAGGAGTGCATCCAGTTCTTTCTTTGATTCTGCAAACCTCTCTTTGTCA
TAGGCATCCACTAGGTATACCACAGCATCAACCTTCGCATAGTAATCCTT
CCAGACTCTCCTAGCAATCTGATGGCCTCCCAAATCAAACGCCTTGAACT
TAATTTTCCC
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