CX046755

Overview
NameCX046755
Unique NameCX046755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:21..578. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046755 vs. ExPASy Swiss-Prot
Match: RL44_CANTR (60S ribosomal protein L44 OS=Candida tropicalis GN=RPL44 PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 5.933e-42
Identity = 78/104 (75.00%), Postives = 88/104 (84.62%), Query Frame = 1
Query:   46 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 357
            MVN+PKT+ TYCK K CRKHT+HKVTQYK G+ SL AQGKRRYDRKQSGYGGQTK VFHKKAKTTKKIVL+L+C  CK   Q P+KRCKH E+GG+KK KG +L
Sbjct:    1 MVNIPKTRNTYCKGKGCRKHTIHKVTQYKAGRASLFAQGKRRYDRKQSGYGGQTKQVFHKKAKTTKKIVLKLECTVCKTKKQLPLKRCKHIELGGEKKQKGQAL 104          
BLAST of CX046755 vs. ExPASy Swiss-Prot
Match: RL44_CAEEL (60S ribosomal protein L44 OS=Caenorhabditis elegans GN=rpl-41 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 3.256e-40
Identity = 75/101 (74.26%), Postives = 86/101 (85.15%), Query Frame = 1
Query:   46 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 348
            MVNVPK ++T+C  K CRKHT HKVTQYKKGK+S  AQG+RRYDRKQSG+GGQTKP+F KKAKTTKKIVLR++C  CKH  Q PIKRCKHFE+GG KK +G
Sbjct:    1 MVNVPKARRTFCDGK-CRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRG 100          
BLAST of CX046755 vs. ExPASy Swiss-Prot
Match: RL44_BRUMA (60S ribosomal protein L44 OS=Brugia malayi GN=rpl-44 PE=3 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.237e-39
Identity = 73/101 (72.28%), Postives = 86/101 (85.15%), Query Frame = 1
Query:   46 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 348
            MVNVPKT++T+C  K CR+HT+HKVTQYKKGK+S  AQG+RRYD KQ G+GGQTKP+F KKAKTTKKIVLR++C  CKH  Q PIKRCKHFE+GG KK +G
Sbjct:    1 MVNVPKTRRTFCDGK-CRRHTMHKVTQYKKGKESRLAQGRRRYDSKQKGFGGQTKPIFRKKAKTTKKIVLRMECTECKHRKQLPIKRCKHFELGGQKKTRG 100          
BLAST of CX046755 vs. ExPASy Swiss-Prot
Match: RL36A_TAKRU (60S ribosomal protein L36a OS=Takifugu rubripes GN=rpl36a PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.701e-39
Identity = 78/103 (75.73%), Postives = 86/103 (83.50%), Query Frame = 1
Query:   46 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 348
            MVNVPKT++TYCK  +C+KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX046755 vs. ExPASy Swiss-Prot
Match: RL36A_ICTPU (60S ribosomal protein L36a OS=Ictalurus punctatus GN=rpl36a PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.701e-39
Identity = 78/103 (75.73%), Postives = 86/103 (83.50%), Query Frame = 1
Query:   46 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 348
            MVNVPKT++TYCK  +C+KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX046755 vs. ExPASy Swiss-Prot
Match: RL36A_DANRE (60S ribosomal protein L36a OS=Danio rerio GN=rpl36a PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.701e-39
Identity = 78/103 (75.73%), Postives = 86/103 (83.50%), Query Frame = 1
Query:   46 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 348
            MVNVPKT++TYCK  +C+KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX046755 vs. ExPASy Swiss-Prot
Match: RL44_CHLRE (60S ribosomal protein L44 OS=Chlamydomonas reinhardtii GN=RPL44 PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 6.140e-39
Identity = 76/98 (77.55%), Postives = 82/98 (83.67%), Query Frame = 1
Query:   46 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK 339
            MVNVPKTK+ +CK   C+KH + KVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR+QCQ CK      +KRCKHFEIGGDKK
Sbjct:    1 MVNVPKTKRAFCKG--CKKHMMMKVTQYKTGKASLYAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRMQCQECKQTCMKGLKRCKHFEIGGDKK 96          
BLAST of CX046755 vs. ExPASy Swiss-Prot
Match: RL36A_RAT (60S ribosomal protein L36a OS=Rattus norvegicus GN=Rpl36a PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.980e-38
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = 1
Query:   46 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 348
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX046755 vs. ExPASy Swiss-Prot
Match: RL36A_PIG (60S ribosomal protein L36a OS=Sus scrofa GN=RPL36A PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.980e-38
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = 1
Query:   46 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 348
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX046755 vs. ExPASy Swiss-Prot
Match: RL36A_MOUSE (60S ribosomal protein L36a OS=Mus musculus GN=Rpl36a PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.980e-38
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = 1
Query:   46 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 348
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
The following BLAST results are available for this feature:
BLAST of CX046755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44_CANTR5.933e-4275.0060S ribosomal protein L44 OS=Candida tropicalis GN... [more]
RL44_CAEEL3.256e-4074.2660S ribosomal protein L44 OS=Caenorhabditis elegan... [more]
RL44_BRUMA1.237e-3972.2860S ribosomal protein L44 OS=Brugia malayi GN=rpl-... [more]
RL36A_TAKRU4.701e-3975.7360S ribosomal protein L36a OS=Takifugu rubripes GN... [more]
RL36A_ICTPU4.701e-3975.7360S ribosomal protein L36a OS=Ictalurus punctatus ... [more]
RL36A_DANRE4.701e-3975.7360S ribosomal protein L36a OS=Danio rerio GN=rpl36... [more]
RL44_CHLRE6.140e-3977.5560S ribosomal protein L44 OS=Chlamydomonas reinhar... [more]
RL36A_RAT3.980e-3874.7660S ribosomal protein L36a OS=Rattus norvegicus GN... [more]
RL36A_PIG3.980e-3874.7660S ribosomal protein L36a OS=Sus scrofa GN=RPL36A... [more]
RL36A_MOUSE3.980e-3874.7660S ribosomal protein L36a OS=Mus musculus GN=Rpl3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A05-B9-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046755 ID=CX046755; Name=CX046755; organism=Citrus sinensis; type=EST; length=558bp
TGGAAGTTACGAAGAGCTCTCTCGTCGTCGCCGCAGCCGGCCATCATGGT
GAATGTTCCCAAGACTAAGAAGACTTACTGCAAGAGCAAGGAGTGCAGAA
AGCACACCTTGCACAAGGTGACACAGTACAAGAAGGGCAAGGACAGTCTT
GCTGCTCAAGGGAAGAGACGGTATGATCGCAAGCAGTCTGGCTATGGCGG
TCAGACCAAGCCTGTCTTCCACAAGAAGGCTAAGACCACCAAGAAGATTG
TGCTGAGGCTCCAATGCCAGGGTTGCAAGCATGTGTCTCAACATCCCATC
AAGAGGTGCAAGCACTTTGAAATTGGTGGAGACAAGAAGGGAAAGGGAAC
ATCTCTTTTCTAAATGCCTTTATTTTTGTTTTTATGCTTTTTACTTTGCT
GCACTTGATGGAACATTACCCAGTATGAGAATATTTGTTTTAGTTTTGTT
GGGTTAGTTTGATGCTGTTAATTTAAAACTTGAAGCGGTTGTTTGTTAAG
TGCTTATTATATCAGTTAATTTTATATTTGGATTTTTTTACCAAAAAAAA
AAAAAAAA
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