CX046754 | Citrus Genome Database

Overview


Name	CX046754
Unique Name	CX046754
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	562

Libraries


Library Name	Type
Ruby Orange Developing Seed cDNA Library UCRCS09	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig13773	contig	Csv1_Contig13773:18..579.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44P_CANMA (60S ribosomal protein L44 P OS=Candida maltosa GN=L41P1A PE=3 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 3.188e-43
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = -1

Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT+KTYCK +ECRKH+ HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRKTYCKGRECRKHSQHKVTQYKAGKSSLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKG 101

[Close]

BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_PICGU (60S ribosomal protein L44 OS=Pichia guilliermondii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 4.163e-43
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = -1

Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT++TYCK K+CRKHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCKGKDCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDKKQKG 101

[Close]

BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_YEAST (60S ribosomal protein L42 OS=Saccharomyces cerevisiae GN=RPL42A PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.211e-42
Identity = 80/101 (79.21%), Postives = 88/101 (87.13%), Query Frame = -1

Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT+KTYCK K CRKHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG
Sbjct:    1 MVNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKG 101

[Close]

BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_SCHPO (60S ribosomal protein L44 OS=Schizosaccharomyces pombe GN=rpl44 PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.066e-42
Identity = 76/101 (75.25%), Postives = 88/101 (87.13%), Query Frame = -1

Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVN+PKT+KTYC  K CRKHT+H+VTQYKKG DS  AQGKRRYDRKQSG+GGQTKPVFHKKAK TKK+VLRL+C  CK+ +Q  +KRCKHFE+GG+KK KG
Sbjct:    1 MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKG 101

[Close]

BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_YARLI (60S ribosomal protein L44 OS=Yarrowia lipolytica GN=RPL44 PE=3 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 2.698e-42
Identity = 79/101 (78.22%), Postives = 86/101 (85.15%), Query Frame = -1

Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVN+PKT+ TYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTK +FHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKQIFHKKAKTTKKVVLRLECVKCKVKMQLALKRCKHFELGGDKKQKG 101

[Close]

BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_KLULA (60S ribosomal protein L44 OS=Kluyveromyces lactis GN=RPL44 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.698e-42
Identity = 78/101 (77.23%), Postives = 87/101 (86.14%), Query Frame = -1

Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT+KTYCK KECRKH  HKVTQYK GK SL AQGKRRYDRKQSG+GGQTK +FHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG
Sbjct:    1 MVNVPKTRKTYCKGKECRKHAQHKVTQYKAGKASLYAQGKRRYDRKQSGFGGQTKQIFHKKAKTTKKVVLRLECMSCKTKTQLALKRCKHFELGGEKKQKG 101

[Close]

BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_DEBOC (60S ribosomal protein L44 OS=Debaryomyces occidentalis GN=RPL44 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.698e-42
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = -1

Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT+KTYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQ GYGGQTK +FHKKAKTTKK+VL+L+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQRGYGGQTKQIFHKKAKTTKKVVLKLECVVCKTKAQLSLKRCKHFELGGDKKQKG 101

[Close]

BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_ASHGO (60S ribosomal protein L44 OS=Ashbya gossypii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 6.011e-42
Identity = 78/101 (77.23%), Postives = 87/101 (86.14%), Query Frame = -1

Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT+KTYCK K CRKHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTK +F KKAKTTKK+VLRL+C  CK  +Q P+KRCKHFE+GG+KK KG
Sbjct:    1 MVNVPKTRKTYCKGKACRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKQIFRKKAKTTKKVVLRLECLSCKTKAQLPLKRCKHFELGGEKKQKG 101

[Close]

BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_KLUMA (60S ribosomal protein L44 OS=Kluyveromyces marxianus GN=RPL44 PE=3 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.025e-41
Identity = 77/101 (76.24%), Postives = 87/101 (86.14%), Query Frame = -1

Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT+KTYCK K CRKH+ HKVTQYK GK SL AQGKRRYDRKQSG+GGQTK +FHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GG+KK KG
Sbjct:    1 MVNVPKTRKTYCKGKACRKHSQHKVTQYKAGKASLYAQGKRRYDRKQSGFGGQTKQIFHKKAKTTKKVVLRLECMSCKTKTQLALKRCKHFELGGEKKQKG 101

[Close]

BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44Q_CANMA (60S ribosomal protein L44 Q OS=Candida maltosa GN=RIM-C PE=3 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.339e-41
Identity = 77/101 (76.24%), Postives = 86/101 (85.15%), Query Frame = -1

Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVN+PKT+ TYCK K CRKHT+HKVTQYK G+ SL AQGKRRYDRKQSGYGGQTK VFHKKAKTTKKIVL+L+C  CK   Q P+KRCKH E+GG+KK KG
Sbjct:    1 MVNIPKTRNTYCKGKGCRKHTIHKVTQYKSGRASLFAQGKRRYDRKQSGYGGQTKQVFHKKAKTTKKIVLKLECTVCKTKKQLPLKRCKHIELGGEKKQKG 101

The following BLAST results are available for this feature:

BLAST of CX046754 vs. ExPASy Swiss-Prot

BLAST of CX046754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42


Match Name	E-value	Identity	Description
RL44P_CANMA	3.188e-43	79.21	60S ribosomal protein L44 P OS=Candida maltosa GN=...	[more]
RL44_PICGU	4.163e-43	79.21	60S ribosomal protein L44 OS=Pichia guilliermondii...	[more]
RL44_YEAST	1.211e-42	79.21	60S ribosomal protein L42 OS=Saccharomyces cerevis...	[more]
RL44_SCHPO	2.066e-42	75.25	60S ribosomal protein L44 OS=Schizosaccharomyces p...	[more]
RL44_YARLI	2.698e-42	78.22	60S ribosomal protein L44 OS=Yarrowia lipolytica G...	[more]
RL44_KLULA	2.698e-42	77.23	60S ribosomal protein L44 OS=Kluyveromyces lactis ...	[more]
RL44_DEBOC	2.698e-42	78.22	60S ribosomal protein L44 OS=Debaryomyces occident...	[more]
RL44_ASHGO	6.011e-42	77.23	60S ribosomal protein L44 OS=Ashbya gossypii GN=RP...	[more]
RL44_KLUMA	1.025e-41	76.24	60S ribosomal protein L44 OS=Kluyveromyces marxian...	[more]
RL44Q_CANMA	1.339e-41	76.24	60S ribosomal protein L44 Q OS=Candida maltosa GN=...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS09_10A05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A05-B9-1-4.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX046754 ID=CX046754; Name=CX046754; organism=Citrus sinensis; type=EST; length=562bp
TTTTTTTTTTTTTTTTTGGTAAAAAAATCCAAATATAAAATTAACTGATA
TAATAAGCACTTAACAAACAACCGCTTCAAGTTTTAAATTAACAGCATCA
AACTAACCCAACAAAACTAAAACAAATATTCTCATACTGGGTAATGTTCC
ATCAAGTGCAGCAAAGTAAAAAGCATAAAAACAAAAATAAAGGCATTTAA
AAAAGAAATGTTCCCTTTCCCTTCTTGTCTCCACCAATTTCAAAGTGCTT
GCACCTCTTGATGGGATGTTGAGACACATGCTTGCAACCCTGGCATTGGA
GCCTCAGCACAATCTTCTTGGTGGTCTTAGCCTTCTTGTGGAAAACAGGC
TTGGTCTGACCGCCATAGCCAGACTGCTTGCGATCATACCGTCTCTTCCC
TTGAGCAGCAAGACTGTCCTTGCCCTTCTTGTACTGTGTCACCTTGTGCA
AGGTGTGCTTTCTGCACTCCTTGCTCTTGCAGTAAGTCTTCTTAGTCTTG
GGAACATTCACCATGATGGCCGGCTGCGGCGACGACGAAAGAGCTCTTCG
TAACTTCCACCT