CX046754

Overview
NameCX046754
Unique NameCX046754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:18..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL36A_HUMAN (60S ribosomal protein L36a OS=Homo sapiens GN=RPL36A PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.032e-38
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL36A_BOVIN (60S ribosomal protein L36a OS=Bos taurus GN=RPL36A PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 4.032e-38
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_AEDTR (60S ribosomal protein L44 OS=Aedes triseriatus GN=RpL44 PE=3 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 8.983e-38
Identity = 70/101 (69.31%), Postives = 85/101 (84.16%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPK ++TYCK  +C+ H +HKVTQYKK K+  A+QG+RRYDRKQ G+GGQTKP+F KKAKTTKKIVLR++C  CK+  Q P+KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKQRRTYCK--KCKVHRVHKVTQYKKSKERKASQGRRRYDRKQKGFGGQTKPIFRKKAKTTKKIVLRMECVDCKYRKQTPLKRCKHFELGGDKKRKG 99          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL36L_HUMAN (60S ribosomal protein L36a-like OS=Homo sapiens GN=RPL36AL PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 8.983e-38
Identity = 76/103 (73.79%), Postives = 85/103 (82.52%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQG+RRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL36L_PONAB (60S ribosomal protein L36a-like OS=Pongo abelii GN=RPL36AL PE=3 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.614e-37
Identity = 75/103 (72.82%), Postives = 85/103 (82.52%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT++T+CK  +C KH  HKVTQYKKGKDSL AQG+RRYDRK+SGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKRSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL36A_DICDI (60S ribosomal protein L36a OS=Dictyostelium discoideum GN=rpl36a PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.434e-35
Identity = 71/100 (71.00%), Postives = 82/100 (82.00%), Query Frame = -1
Query:  215 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK 514
            MVN+PK +KT+C   +C KHT HKVTQYK GK SL AQGKRRYDRKQSG+GGQTKPVFHKKAKTTKKIVLR++C  C +  Q  +KRCK FE+GG+KK K
Sbjct:    1 MVNIPKARKTHCV--KCNKHTPHKVTQYKAGKPSLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKIVLRMEC-SCGYKKQQVLKRCKRFELGGEKKSK 97          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_PLAF7 (60S ribosomal protein L44 OS=Plasmodium falciparum (isolate 3D7) GN=RPL44 PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.873e-35
Identity = 69/101 (68.32%), Postives = 83/101 (82.18%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT+KTYC +K C+KHT+HKV+QYKKGK+ L++ G+RRYD KQ G+GGQTKPVF KKAKTTKKIVL+L+C  CK      +KRCK FE+G DKK KG
Sbjct:    1 MVNVPKTRKTYCSNK-CKKHTMHKVSQYKKGKERLSSLGRRRYDMKQKGFGGQTKPVFKKKAKTTKKIVLKLECTKCKKKRFQTMKRCKTFEMGADKKKKG 100          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL36A_PAPAN (60S ribosomal protein L36a OS=Papio anubis GN=RPL36A PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.532e-34
Identity = 72/103 (69.90%), Postives = 80/103 (77.67%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT++T+CK  +  KH  HKVTQYKKGKDSL A GKRRYDRKQSGYGG TKP+F KKAKTTKKIVLRL+C    C+       KRCKHFE+GGDK  KG
Sbjct:    1 MVNVPKTRQTFCKKYD--KHQPHKVTQYKKGKDSLYALGKRRYDRKQSGYGGHTKPIFWKKAKTTKKIVLRLECVEPNCRSERMLATKRCKHFELGGDKTRKG 101          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_TRYBB (60S ribosomal protein L44 OS=Trypanosoma brucei brucei GN=RPL44 PE=3 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.938e-32
Identity = 64/98 (65.31%), Postives = 73/98 (74.49%), Query Frame = -1
Query:  221 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK 514
            MVN PK KK +C  + C  H   KV QYK GK  L A+GKRRYDRKQSGYGGQTKP+FHKKAKTTKKIVL+LQC  CK + Q+ +KR KHFE+   KK
Sbjct:    1 MVNYPKKKKMHCPDERCNAHKSFKVVQYKAGKARLYARGKRRYDRKQSGYGGQTKPIFHKKAKTTKKIVLKLQCSNCKSIIQNVLKRTKHFELNDKKK 98          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_ENCCU (60S ribosomal protein L44 OS=Encephalitozoon cuniculi GN=RPL44 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.955e-29
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVN+PKT+ T+CK  +C+ ++ HKV+Q KK KD+  AQG RRY RKQ GYGGQTKP+  +KAK TKK+VL L+C  CK   Q P+KR KH   GG++K KG
Sbjct:    1 MVNIPKTRNTFCK--KCKGYSAHKVSQAKKSKDNPRAQGNRRYARKQRGYGGQTKPILRRKAKVTKKLVLNLECTKCKFSHQKPLKRAKHVIFGGERKRKG 99          
The following BLAST results are available for this feature:
BLAST of CX046754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL36A_HUMAN4.032e-3874.7660S ribosomal protein L36a OS=Homo sapiens GN=RPL3... [more]
RL36A_BOVIN4.032e-3874.7660S ribosomal protein L36a OS=Bos taurus GN=RPL36A... [more]
RL44_AEDTR8.983e-3869.3160S ribosomal protein L44 OS=Aedes triseriatus GN=... [more]
RL36L_HUMAN8.983e-3873.7960S ribosomal protein L36a-like OS=Homo sapiens GN... [more]
RL36L_PONAB2.614e-3772.8260S ribosomal protein L36a-like OS=Pongo abelii GN... [more]
RL36A_DICDI1.434e-3571.0060S ribosomal protein L36a OS=Dictyostelium discoi... [more]
RL44_PLAF71.873e-3568.3260S ribosomal protein L44 OS=Plasmodium falciparum... [more]
RL36A_PAPAN3.532e-3469.9060S ribosomal protein L36a OS=Papio anubis GN=RPL3... [more]
RL44_TRYBB1.938e-3265.3160S ribosomal protein L44 OS=Trypanosoma brucei br... [more]
RL44_ENCCU9.955e-2957.4360S ribosomal protein L44 OS=Encephalitozoon cunic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_10A05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A05-B9-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046754 ID=CX046754; Name=CX046754; organism=Citrus sinensis; type=EST; length=562bp
TTTTTTTTTTTTTTTTTGGTAAAAAAATCCAAATATAAAATTAACTGATA
TAATAAGCACTTAACAAACAACCGCTTCAAGTTTTAAATTAACAGCATCA
AACTAACCCAACAAAACTAAAACAAATATTCTCATACTGGGTAATGTTCC
ATCAAGTGCAGCAAAGTAAAAAGCATAAAAACAAAAATAAAGGCATTTAA
AAAAGAAATGTTCCCTTTCCCTTCTTGTCTCCACCAATTTCAAAGTGCTT
GCACCTCTTGATGGGATGTTGAGACACATGCTTGCAACCCTGGCATTGGA
GCCTCAGCACAATCTTCTTGGTGGTCTTAGCCTTCTTGTGGAAAACAGGC
TTGGTCTGACCGCCATAGCCAGACTGCTTGCGATCATACCGTCTCTTCCC
TTGAGCAGCAAGACTGTCCTTGCCCTTCTTGTACTGTGTCACCTTGTGCA
AGGTGTGCTTTCTGCACTCCTTGCTCTTGCAGTAAGTCTTCTTAGTCTTG
GGAACATTCACCATGATGGCCGGCTGCGGCGACGACGAAAGAGCTCTTCG
TAACTTCCACCT
back to top