CX046754

Overview
NameCX046754
Unique NameCX046754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:18..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_THEAC (50S ribosomal protein L44E OS=Thermoplasma acidophilum GN=rpl44e PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.658e-13
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = -1 
Query:  236 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI 511
            + +PK   TYC    C+KHT H V + +K K S    G+RR+ R  SGYGG  +P F  + K TK+I LRL C  C      P  R K FEI
Sbjct:    1 MKMPKKIMTYCPY--CKKHTSHSVERVRKRKASELKAGQRRFRRVTSGYGGFPRPKFEGREKPTKRIALRLVCDECHKAITPPGIRAKKFEI 90
[Close]
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_AERPE (50S ribosomal protein L44E OS=Aeropyrum pernix GN=rpl44e PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 36/73 (49.32%), Postives = 43/73 (58.90%), Query Frame = -1 
Query:  284 PKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGC 502
            PK  +TYC    C  HT H+V QY+ GK    A G+RRY RKQ GYG Q +P   + AK TKK VL + C  C
Sbjct:    4 PKRIRTYCP--RCNTHTEHRVAQYRAGKRRAMALGERRYRRKQEGYGSQRRPEQKRFAKVTKKQVLVITCTVC 74
The following BLAST results are available for this feature:
BLAST of CX046754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44_THEAC7.658e-1343.4850S ribosomal protein L44E OS=Thermoplasma acidoph... [more]
RL44_AERPE3.800e-1249.3250S ribosomal protein L44E OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A05-B9-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046754 ID=CX046754; Name=CX046754; organism=Citrus sinensis; type=EST; length=562bp
TTTTTTTTTTTTTTTTTGGTAAAAAAATCCAAATATAAAATTAACTGATA
TAATAAGCACTTAACAAACAACCGCTTCAAGTTTTAAATTAACAGCATCA
AACTAACCCAACAAAACTAAAACAAATATTCTCATACTGGGTAATGTTCC
ATCAAGTGCAGCAAAGTAAAAAGCATAAAAACAAAAATAAAGGCATTTAA
AAAAGAAATGTTCCCTTTCCCTTCTTGTCTCCACCAATTTCAAAGTGCTT
GCACCTCTTGATGGGATGTTGAGACACATGCTTGCAACCCTGGCATTGGA
GCCTCAGCACAATCTTCTTGGTGGTCTTAGCCTTCTTGTGGAAAACAGGC
TTGGTCTGACCGCCATAGCCAGACTGCTTGCGATCATACCGTCTCTTCCC
TTGAGCAGCAAGACTGTCCTTGCCCTTCTTGTACTGTGTCACCTTGTGCA
AGGTGTGCTTTCTGCACTCCTTGCTCTTGCAGTAAGTCTTCTTAGTCTTG
GGAACATTCACCATGATGGCCGGCTGCGGCGACGACGAAAGAGCTCTTCG
TAACTTCCACCT
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