CX046753

Overview
NameCX046753
Unique NameCX046753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6737 contig Csv1_Contig6737:14..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046753 vs. ExPASy Swiss-Prot
Match: DCNL5_BOVIN (DCN1-like protein 5 OS=Bos taurus GN=DCUN1D5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.366e-14
Identity = 37/110 (33.64%), Postives = 63/110 (57.27%), Query Frame = 1
Query:  304 KLMSQLDLM----GDFSEFSRFYDFVFFMCRENGQKNITVSRAVTAWRLVLAGRFRLLNQWCDFVERNQRHNISEDTWQQVLAFSRCVHENLEGYDPEGAWPVLIDDFVE 621
            KL ++ D +     D S F   Y + F   R+  Q+++ +  A +   L+L   + L + +  ++E+++   +++D W  VL FSR VH +L  YD +GAWPVL+D+FVE
Sbjct:  119 KLQNKFDFLRSQLNDISSFKNIYRYAFDFARDKDQRSLDIDTAKSMLALLLGRTWPLFSVFYQYLEQSKYRVMNKDQWYNVLEFSRTVHADLSNYDEDGAWPVLLDEFVE 228          
BLAST of CX046753 vs. ExPASy Swiss-Prot
Match: DCNL5_PONAB (DCN1-like protein 5 OS=Pongo abelii GN=DCUN1D5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.086e-13
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 1
Query:  304 KLMSQLDLM----GDFSEFSRFYDFVFFMCRENGQKNITVSRAVTAWRLVLAGRFRLLNQWCDFVERNQRHNISEDTWQQVLAFSRCVHENLEGYDPEGAWPVLIDDFVE 621
            KL ++ D +     D S F   Y + F   R+  Q+++ +  A +   L+L   + L + +  + E+++   +++D W  VL FSR VH +L  YD +GAWPVL+D+FVE
Sbjct:  120 KLQNKFDFLRSQLNDISSFKNIYRYAFDFARDKDQRSLDIDTAKSMLALLLGRTWPLFSVFYQYPEQSKYRVMNKDQWYNVLEFSRAVHADLSNYDEDGAWPVLLDEFVE 229          
BLAST of CX046753 vs. ExPASy Swiss-Prot
Match: DCN1_YARLI (Defective in cullin neddylation protein 1 OS=Yarrowia lipolytica GN=DCN1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.086e-13
Identity = 34/98 (34.69%), Postives = 55/98 (56.12%), Query Frame = 1
Query:  340 SEFSRFYDFVFFMCRENGQKNITVSRAVTAWRLVLAGRFRLLNQWCDFVERNQRHNISEDTWQQVLAFS--RCVHENLEGYDPEGAWPVLIDDFVEHM 627
            ++F + Y F +    + GQ+ +    AV  WRL+L G++  L++W  FV    + NIS D W  +  F   +    +LE YD +GAWP +ID++VE +
Sbjct:  141 ADFQKIYKFTYGFLLQEGQRVLPQETAVDYWRLLLTGKYEHLDKWLSFVTEKYKRNISRDAWNMLYEFMLFQAKDPSLESYDEDGAWPSVIDEYVEFL 238          
BLAST of CX046753 vs. ExPASy Swiss-Prot
Match: DCNL4_DANRE (DCN1-like protein 4 OS=Danio rerio GN=dcun1d4 PE=4 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.675e-12
Identity = 39/114 (34.21%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  292 DELFKLMSQLD----LMGDFSEFSRFYDFVFFMCRENGQKNITVSRAVTAWRLVLAGRFRLLNQWCDFVERNQRHNISEDTWQQVLAFSRCVHENLEGYDPEGAWPVLIDDFVE 621
            D   KL + LD    ++ D + F   Y + F   RE  Q+++ ++ A     L+L   + L   +  F+E+++   I++D W  VL FSR ++ +L  YD +GAWPVL+D+FVE
Sbjct:  159 DSTEKLRNSLDYLRSVLNDATSFKLIYRYAFDFAREKDQRSLDLNTAKCMLGLLLGKTWPLFPVFNQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVE 272          
BLAST of CX046753 vs. ExPASy Swiss-Prot
Match: DCNL4_MOUSE (DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  292 DELFKLMSQLD----LMGDFSEFSRFYDFVFFMCRENGQKNITVSRAVTAWRLVLAGRFRLLNQWCDFVERNQRHNISEDTWQQVLAFSRCVHENLEGYDPEGAWPVLIDDFVE 621
            D   KL + LD    L+ D + F   Y + F   RE  Q+++ ++ A     L+L   + L   +  F+E+++   I++D W  VL FSR +  +L  YD +GAWPVL+D+FVE
Sbjct:  171 DTTEKLRTTLDYLRSLLNDTTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLEQSKYKVINKDQWCNVLEFSRTISLDLSNYDEDGAWPVLLDEFVE 284          
BLAST of CX046753 vs. ExPASy Swiss-Prot
Match: DCNL4_HUMAN (DCN1-like protein 4 OS=Homo sapiens GN=DCUN1D4 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.959e-12
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  292 DELFKLMSQLD----LMGDFSEFSRFYDFVFFMCRENGQKNITVSRAVTAWRLVLAGRFRLLNQWCDFVERNQRHNISEDTWQQVLAFSRCVHENLEGYDPEGAWPVLIDDFVE 621
            D   KL + LD     + D + F   Y + F   RE  Q+++ ++ A     L+L   + L   +  F+E+++   I++D W  VL FSR ++ +L  YD +GAWPVL+D+FVE
Sbjct:  171 DTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLEQSKYKVINKDQWCNVLEFSRTINLDLSNYDEDGAWPVLLDEFVE 284          
BLAST of CX046753 vs. ExPASy Swiss-Prot
Match: DCNL3_XENTR (DCN1-like protein 3 OS=Xenopus tropicalis GN=dcun1d3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 43/132 (32.58%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  307 LMSQLDLMGDFSEFSRFYDFVFFMCRENGQKNITVSRAVTAWRLVLA-GRFRLLNQWCDFVERNQR--HNISEDTWQQVLAFSRCVHENLEGYDPEGAWPVLIDDFVE-HMYRVSGSKENPGLFCSCGDSES 690
            L+++      F +  RF  F F +  E GQ+++    A+  W+LV    +  +L+QW DF+  N      IS DTW   L F++ +  +L  Y  + AWP L D FVE  M R    +E   + CS  D +S
Sbjct:  168 LLNEAKQEDKFKDLYRF-TFQFGLDSEEGQRSLHREIAIALWKLVFTQNKPLILDQWLDFLTENPSGIKGISRDTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMERRKNEEETKCIPCSGTDDQS 298          
The following BLAST results are available for this feature:
BLAST of CX046753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
DCNL5_BOVIN6.366e-1433.64DCN1-like protein 5 OS=Bos taurus GN=DCUN1D5 PE=2 ... [more]
DCNL5_PONAB1.086e-1333.64DCN1-like protein 5 OS=Pongo abelii GN=DCUN1D5 PE=... [more]
DCN1_YARLI1.086e-1334.69Defective in cullin neddylation protein 1 OS=Yarro... [more]
DCNL4_DANRE2.675e-1234.21DCN1-like protein 4 OS=Danio rerio GN=dcun1d4 PE=4... [more]
DCNL4_MOUSE3.493e-1235.09DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=... [more]
DCNL4_HUMAN5.959e-1234.21DCN1-like protein 4 OS=Homo sapiens GN=DCUN1D4 PE=... [more]
DCNL3_XENTR8.604e-1132.58DCN1-like protein 3 OS=Xenopus tropicalis GN=dcun1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A04-B7-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046753 ID=CX046753; Name=CX046753; organism=Citrus sinensis; type=EST; length=828bp
CACACACTCACTTTGATCCTTCTTAGATAGGCGTTAAAGAAGTGTAAAGC
CTAGCTGGGTCTCGGCTCCGATAACCCAGAATCCATGAAATCACCTTCCC
TTTCTAATCCTCTTGATATCTTCGAGATTTACCGACGGTTTTGCGAAATT
AAATCTCAAAATGCAGATGTTTGTATAGAGGACAGTTATAGAGAAGACAA
TGAATCCCCAAAGGCCAAATTTTCCAGGGAGGCATTGGCTGAGCTATTTA
ACTTGGTTGAGTCAACTGTACATATAAGGATTTTTGTTTTTGATGAACTA
TTCAAGCTCATGTCACAGCTAGACTTGATGGGTGACTTTTCTGAATTTTC
GCGCTTCTATGATTTTGTTTTCTTCATGTGCCGTGAAAATGGTCAAAAGA
ATATAACCGTAAGCAGAGCGGTCACTGCCTGGAGATTAGTCTTAGCTGGG
AGATTTCGGTTACTTAACCAATGGTGTGACTTTGTTGAGAGAAATCAGCG
ACATAACATCTCTGAGGATACTTGGCAGCAAGTTTTAGCATTCAGCCGGT
GTGTACATGAAAATTTGGAAGGGTATGATCCTGAAGGTGCTTGGCCTGTC
CTTATAGATGACTTCGTGGAGCATATGTACAGAGTATCAGGATCTAAGGA
AAATCCCGGCTTATTTTGTAGCTGTGGTGATTCAGAATCCCAATCTTGTG
GATATGAGGACTCTCTTCCTGGATTGAAAATTTTTCCGGGTTTGAAGAGG
AAGTCATCTGGCATAGAACAAGATGAAATGGAGTCTTCAGATGCTCATAT
CCCTGAATTAACAGACCACAATCACATA
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