CX046751

Overview
NameCX046751
Unique NameCX046751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10886 contig Csv1_Contig10886:670..1489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALX_YEAST (Calnexin homolog OS=Saccharomyces cerevisiae GN=CNE1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.619e-20
Identity = 63/204 (30.88%), Postives = 82/204 (40.20%), Query Frame = 2
Query:    8 EEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKP--DFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            E+K+K NF      +PP+                   R +IPDP+AVK  D DE  P+ I   D  +P  W            A KP             P I NP C A  GCG+    +  N  YKG      I NPNY G W P +I NP Y+E   P      I+ V +E W+    +L  NI + K+   A+      W
Sbjct:  231 EDKKKVNF------EPPITPPLMIPDVSVAKPHDWDDRIRIPDPEAVKLSDRDERDPLMIPHPDGTEPPEWNSSIPEYILDPNAQKPSWWKELEHGEWIPPMIKNPLCTAERGCGQQIPGLINNAKYKGPGELNEIINPNYMGEWHPPEIENPLYYEEQHPLRIENVISGVILEFWSGSPNMLISNIYVGKNVTEAQIIGNKTW 428          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.619e-20
Identity = 60/182 (32.97%), Postives = 80/182 (43.96%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDE----------------DAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKP---DFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            KI DP+A KP+DWD+                D P EI D DA KPE W                                D+ +       GEW  P   NP YKG W    I NPNY+G WK   I NP++   D P    F+ +  +GIE+W ++ G LFDNI+I+ D  +A+++    W
Sbjct:  213 KIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDW--------------------------------DDEED------GEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDF--KDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTFAEETW 354          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_SCHMA (Calreticulin OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 9.951e-20
Identity = 55/159 (34.59%), Postives = 75/159 (47.17%), Query Frame = 2
Query:  155 DDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNY-FELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFD 628
            DDWD   P +I+D +  KP+ W+             KP              K  +   +A    GEW+RP K NP YKG+W    IDNP YKG WKP QI NP Y  + +      I  VG ++W +  G +FDNILI+     A+      W+ ++D
Sbjct:  196 DDWDMLPPKKIDDPNDKKPDDWVDEQFIDDPDD--KKPDNWDQPKTIPDMDAKKPDDWDDAMD--GEWERPQKDNPEYKGEWTPRRIDNPKYKGEWKPVQIDNPEYKHDPELYVLNDIGYVGFDLWQVDSGSIFDNILITDSPDFAKEEGERLWRKRYD 350          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_ONCVO (Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.300e-19
Identity = 62/199 (31.16%), Postives = 90/199 (45.23%), Query Frame = 2
Query:    2 DGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESY 598
            DGE+ +     A  DF PP                      KI DPDA KP+DWDE     I+DED  KPE W            A KP             P +DNP+ +     GEWK   K+NPAYKGKW  P I+ P+Y         P+ N +      ++ I A+G ++W ++ G +FD+++++   + A+ +
Sbjct:  185 DGEKAESGELEADWDFLPP---------------------KKIKDPDAKKPEDWDERE--FIDDEDDKKPEDW--DKPEHIPDPDAKKPEDWDDEMDGEWEPPMVDNPEYK-----GEWKPKQKKNPAYKGKWIHPEIEIPDY--------TPDDNLYV-----YDDIGAIGFDLWQVKSGTIFDDVIVTDSVEEAKKF 340          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_CAEBR (Calreticulin OS=Caenorhabditis briggsae GN=crt-1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.300e-19
Identity = 59/164 (35.98%), Postives = 80/164 (48.78%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD-FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            KI DPDA KP+DWDE     I+D + VKPE W              KP             P    P+       GEW+ PM  NP YKG+W    I NP YKG W   +I NP Y   D+   +E   A+G ++W ++ G +FDN+LI+   + AE++ A  +
Sbjct:  202 KIKDPDAKKPEDWDERE--YIDDAEDVKPEDW-------------EKPEHIPD--------PDAKKPEDWDDEMDGEWEPPMIDNPEYKGEWKPKQIKNPAYKGKWIHPEIENPEYTPDDELYLYENWGAIGFDLWQVKSGTIFDNVLITDSVEEAEAHAAETF 342          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.697e-19
Identity = 61/170 (35.88%), Postives = 80/170 (47.06%), Query Frame = 2
Query:  128 IPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFD 628
            I DP A KP+DWDE     I+D +  KPEG+            A KP            AP I NP+ +     G WK    +NP YKGKW APLIDNP++K                D PD   F  +  VG+E+W ++ G LFDNI+I  D + A++     W  + D
Sbjct:  216 IKDPSAKKPEDWDEKE--FIDDPEDKKPEGY-DDIPEEITDPDAKKPEDWDDEEDGEWTAPTIPNPEYK-----GPWKPKKIKNPNYKGKWKAPLIDNPDFK----------------DDPDLYVFPKLKYVGVELWQVKSGTLFDNIVICDDPEYAKAIAEETWGKQKD 361          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_CAEEL (Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.697e-19
Identity = 58/164 (35.37%), Postives = 79/164 (48.17%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDK-PDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            KI DPDA KP+DWDE     I+D +  KPE W              KP             P    P+       GEW+ PM  NP YKG+W    I NP YKG W   +I NP Y   D+   +E   A+G ++W ++ G +FDNI+I+   + AE++ A  +
Sbjct:  202 KIKDPDAKKPEDWDERE--YIDDAEDAKPEDW-------------EKPEHIPD--------PDAKKPEDWDDEMDGEWEPPMIDNPEYKGEWKPKQIKNPAYKGKWIHPEIENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEEAEAHAAETF 342          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.217e-19
Identity = 59/182 (32.42%), Postives = 80/182 (43.96%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDE----------------DAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKP---DFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAW 613
            +I DP+A KP+DWD+                D P EI D DA KPE W                                D+ +       GEW  P   NP YKG W    I NPNY+G WK   I NP++   D P    F+ +  +GIE+W ++ G LFDN LI+ D ++A+++    W
Sbjct:  217 QIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDW--------------------------------DDEED------GEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDF--KDDPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPELAKTFAEETW 358          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.217e-19
Identity = 60/187 (32.09%), Postives = 79/187 (42.25%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWD----------------EDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFD 628
            KI DP+A KP+DWD                +D P EI D +A KPE W                                D+ +       GEW  P   NP YKG W A  I NPNYKG WK   I NP +   D P+   +  +  VG+E+W ++ G LFDN+L+  D + A+      W  + D
Sbjct:  213 KIKDPEAKKPEDWDDKEFIPDPEDKKPEGYDDIPAEITDPEAKKPEDW--------------------------------DDEE------DGEWTAPTIPNPEYKGPWKAKKIKNPNYKGKWKAPMIDNPEF--KDDPELYVYPKLRYVGVELWQVKSGTLFDNVLVCDDPEYAKQLAEETWGKQKD 359          
BLAST of CX046751 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.451e-18
Identity = 60/187 (32.09%), Postives = 80/187 (42.78%), Query Frame = 2
Query:  125 KIPDPDAVKPDDWDE----------------DAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQQIPNPNYFELDKPD---FEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFD 628
            KI DP+A KP+DW++                D P EI D DA KPE W                                D+ +       GEW  P   NP YKG+W    I NPN+KG WK   I NP +   D P+   +  +  VGIE+W ++ G LFDNILI+ + + A+      W  + D
Sbjct:  212 KIKDPEAKKPEDWEDQEYIPDPEDKKPEGYDDIPKEITDPDAKKPEDW--------------------------------DDEED------GEWTAPTIPNPEYKGEWKPKKIKNPNFKGKWKAPLIDNPEF--KDDPELYVYPNLKYVGIELWQVKSGTLFDNILITDEPEYAKQLAEETWGKQKD 358          
The following BLAST results are available for this feature:
BLAST of CX046751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CALX_YEAST7.619e-2030.88Calnexin homolog OS=Saccharomyces cerevisiae GN=CN... [more]
CALR_MAIZE7.619e-2032.97Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR_SCHMA9.951e-2034.59Calreticulin OS=Schistosoma mansoni PE=2 SV=2[more]
CALR_ONCVO1.300e-1931.16Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 ... [more]
CALR_CAEBR1.300e-1935.98Calreticulin OS=Caenorhabditis briggsae GN=crt-1 P... [more]
CALR_NICPL1.697e-1935.88Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR_CAEEL1.697e-1935.37Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE... [more]
CALR_ORYSJ2.217e-1932.42Calreticulin OS=Oryza sativa subsp. japonica GN=Os... [more]
CALR_BETVU2.217e-1932.09Calreticulin OS=Beta vulgaris PE=2 SV=1[more]
CALR_PRUAR2.451e-1832.09Calreticulin OS=Prunus armeniaca PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_10A03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A03-B5-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046751 ID=CX046751; Name=CX046751; organism=Citrus sinensis; type=EST; length=820bp
TGATGGAGAGGAGAAGCAGAAGGCAAATTTCCTCGCTGCTGATGATTTTC
AGCCACCGCTCATTCCTGAGAAGACAATTCCTGATCCAGATGACAAGAAG
CCTGAGGATTGGGATGAGAGGGCAAAGATTCCTGACCCTGATGCAGTAAA
ACCTGACGACTGGGATGAGGATGCTCCGATGGAAATTGAAGATGAGGATG
CTGTGAAACCTGAAGGATGGCTGGATGATGAGCCTGAGGAGATAGATGAC
CCTGAGGCCACAAAACCTGAGGATTGGGATGATGAGGAGGATGGTGAATG
GGAGGCCCCAAAGATTGATAACCCAAAGTGTGAAGCAGCCCCTGGATGCG
GCGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCCTACAAGGGCAAATGG
CATGCTCCACTTATTGACAACCCTAATTACAAGGGTATTTGGAAGCCTCA
GCAGATTCCAAACCCCAACTATTTTGAGCTTGACAAACCTGACTTTGAGC
CTATTGCTGCTGTCGGCATTGAGATCTGGACAATGCAGGATGGTATTTTG
TTTGACAACATTTTGATATCAAAGGATGAGAAAGTTGCAGAGTCCTATCG
GGCTTCTGCATGGAAGCCTAAGTTTGATGTTGAGAAAGAGAAACTGAAGG
CTGAGGAAGCAGCTGCTGGTTCAGATGGCCTTGCAGGCTTCCAGAAGACG
GTATTTGATCTCTTGTACAAGGTTGCAGACATTCCTTTCTTGGATGCATA
CAAACTTAAGATCATTGATGTGATTGAGAAGGGAGAGAAACAACCAAACC
TTACAATTGGTATCCTTGTC
back to top