DN618400

Overview
NameDN618400
Unique NameDN618400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  285 VQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 557
            V + LS H+ DE YLG+ +  + +W +D   L  F +F   L +IE  ++ RN D +L+ RCG    PY LLLPSS  G+T RGIPNSISI
Sbjct:  769 VIEILSRHASDEVYLGERD--NPNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 857          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = -2
Query:  285 VQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKG-RCGAGIPPYELLLPSSGPGVTGRGIPNSISI 557
            V + LSTH+ DE YLGQ +  + HW +D + L  F KF   L+EIE+ +  RN D  L+G R G    PY LL PSS  G+T RGIPNSISI
Sbjct:  750 VIEILSTHASDEVYLGQRD--NPHWTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.955e-14
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  285 VQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 557
            V + LS H+ DE YLGQ +    +W +D   L  F +F   LEEIEK +  +NKD  L+ R G    PY LL PSS  G+T RGIPNSISI
Sbjct:  764 VIEILSRHASDEFYLGQRDG-GDYWTSDAGPLEAFKRFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSEEGLTFRGIPNSISI 853          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 44/91 (48.35%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  285 VQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 557
            V + LS H+ DE YLG+ +  + +W +D   L  F KF   L EIEK +  RN D +L+ R G    PY LL PSS  G+T RGIPNSISI
Sbjct:  773 VIEILSRHASDELYLGERD--NPNWTSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKEGLTFRGIPNSISI 861          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13
Identity = 43/89 (48.31%), Postives = 51/89 (57.30%), Query Frame = -2
Query:  285 DTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 551
            + LS H+ DE YLGQ       W  D E L  FD+F   L +IEK I  RN D  L  R G    PY LL P+S  G+TG+GIPNS+SI
Sbjct:  775 EILSRHTTDEIYLGQRES--PEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIPNSVSI 861          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.564e-13
Identity = 44/91 (48.35%), Postives = 53/91 (58.24%), Query Frame = -2
Query:  285 VQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 557
            V + LS H+ DE YLGQ  + + HW +D + L  F KF   L EIE  +  +N D  L  R G    PY LL PSS  G+T RGIPNSISI
Sbjct:  776 VIEILSRHASDEVYLGQ--RENPHWTSDSKALQAFQKFGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSKEGLTFRGIPNSISI 864          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 9.741e-13
Identity = 43/95 (45.26%), Postives = 53/95 (55.79%), Query Frame = -2
Query:  285 DTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPS------SGPGVTGRGIPNSISI 551
            + LS HS DE YLGQ +     W +DP+ L  F +FS  L EIE  +   NKD  LK R G    PY L+ P+      +  G+T RGIPNSISI
Sbjct:  771 EILSKHSADEIYLGQRDT--PEWTSDPKALEAFKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  285 VQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 557
            V + LS H+ DE YLGQ +  + HW +D + L  F KF   L+EIE+ +  +N D  L  R G    PY LL P+S  G+T RGIPNSISI
Sbjct:  778 VIEILSRHASDEVYLGQRD--NPHWTSDSKALQAFQKFGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPNS-EGLTCRGIPNSISI 865          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12
Identity = 41/89 (46.07%), Postives = 51/89 (57.30%), Query Frame = -2
Query:  285 DTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 551
            + LS H+ DE YLGQ       W  D E L  F++F   L +IEK I  RN +  L  R G    PY LL P+S  G+TG+GIPNS+SI
Sbjct:  774 EILSRHTTDEIYLGQRES--PEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEGGLTGKGIPNSVSI 860          
BLAST of DN618400 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = -2
Query:  285 VQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPS-SGPGVTGRGIPNSISI 557
            V + LS H+ DE YLGQ +  + +W N+ + L  F +F   L+EIE+ I  RNKD  L+ R G    PY +LLP+    G+T RGIPNSISI
Sbjct:  773 VIEILSRHASDEVYLGQRD--NPNWTNNIKALQAFKRFGQKLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCEDEGLTFRGIPNSISI 862          
The following BLAST results are available for this feature:
BLAST of DN618400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
LOX3_SOYBN6.102e-1547.25Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX1_SOYBN1.775e-1451.09Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX4_SOYBN3.955e-1449.45Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOX3_PEA5.165e-1448.35Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX1_SOLTU1.963e-1348.31Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX2_PEA2.564e-1348.35Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX1_ORYSJ9.741e-1345.26Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX2_SOYBN1.662e-1247.25Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOXA_SOLLC2.170e-1246.07Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOXA_PHAVU2.834e-1246.74Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02I07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618400 ID=DN618400; Name=DN618400; organism=Citrus sinensis; type=EST; length=558bp
TTTTTTTTTTTTTTTTTCAGAAAACGATATGTTCAATATAAGTTGCAGCA
TCTTATATGTTGCTTTACAAAGATCAGATCAGATCCAATATCATGATATT
CCAAGTTTTCTGTGTCCTATCATATCTTTTACCCACAAATTACAGAGCTT
TAATATCAAATACCGAACCCCAAAAGATCTATTGAAGGTCCATACAACCG
CACAGCACAGAAATAAAATGGTATGCACTAACCGATAGTGACAAAAAGGC
ATCTACCAGTGTCTCAATTTAGCTAAGTCCATCAGATAGAAATACTATTG
GGGATTCCTCGACCAGTTACTCCCGGACCAGAGGAAGGAAGAAGCAGTTC
ATATGGTGGAATGCCAGCACCACATCTGCCTTTAAGACGGAAATCTTTAT
TTCTTGTATTTATTATCTTTTCAATCTCCTCCAGATTAGCAGAGAACTTA
TCAAACATATTCAAAACTTCAGGGTCATTGATCCAGTGGCTGTGTAACTG
GTTCACCTGACCTAGATACTCTTCATCAGGAGAGTGAGTGGACAGAGTGT
CTTGGACA
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