DN618344

Overview
NameDN618344
Unique NameDN618344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length517
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618344 vs. ExPASy Swiss-Prot
Match: TCTP_CAEEL (Translationally-controlled tumor protein homolog OS=Caenorhabditis elegans GN=tct-1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 47/143 (32.87%), Postives = 77/143 (53.85%), Query Frame = 1
Query:   79 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAF-DKKQFVTYMKRFIKLLTPKLSEERQ-----EIFKKNIEGATKFLLSK--LSDLQFFVGE 480
            ML+Y+D+ T DEL SDSFP K  ++ +++E +GK VV+   ++ + G+NPS               + +DIV   +L E   + D   F  Y+K+F+K +   + +  +     + FKK I+G    LL+K    +L FF+GE
Sbjct:    1 MLIYKDIFTDDELSSDSFPMKLVDD-LVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGE 142          
BLAST of DN618344 vs. ExPASy Swiss-Prot
Match: TCTP_PLAF7 (Translationally-controlled tumor protein homolog OS=Plasmodium falciparum (isolate 3D7) GN=TCTP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.550e-11
Identity = 46/154 (29.87%), Postives = 80/154 (51.95%), Query Frame = 1
Query:   79 MLVYQDLLTGDELLSDSF----PYKETE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAY 516
            M V++D+ T DE+ SDS+    P++  E   I +EV+    ++G  D  I  N                  V+DIVD+F+L    AF KK++  Y+K +++ +   L E   +R EIFK   +   K +L+   D +F++GES+  +  ++++Y
Sbjct:    1 MKVFKDVFTNDEVCSDSYVQQDPFEVPEFREIAFEVKSNKRIKGNEDYGIADNSEDAVEGMGADVEH----VIDIVDSFQLTST-AFSKKEYSAYIKNYMQKVAKYLEEKKPDRVEIFKTKAQPFIKHILTNFDDFEFYMGESLDMEAGIIYSY 149          
BLAST of DN618344 vs. ExPASy Swiss-Prot
Match: TCTP_PLAYO (Translationally-controlled tumor protein homolog OS=Plasmodium yoelii yoelii GN=TCTP PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.643e-11
Identity = 46/154 (29.87%), Postives = 78/154 (50.65%), Query Frame = 1
Query:   79 MLVYQDLLTGDELLSDSF----PYKETE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAY 516
            M VY+D+ T DE+ SDS+    P+   E   I +EV+    ++G  D  I  N                  V+DIVD+F+L    +  KK++  Y+K F++ +   L E   +R +IFK   +   K +L+   D +F++GES+  +  L+++Y
Sbjct:    1 MKVYKDIFTNDEVCSDSYIQEDPFGNPEFREIAFEVKSNKRIKGNDDYGIADNSEDAVDGMGADVEH----VIDIVDSFQLTST-SLSKKEYSAYVKNFMQRILKHLEEKKPDRVDIFKTKAQPLIKHILTNFDDFEFYMGESLDMEAGLIYSY 149          
BLAST of DN618344 vs. ExPASy Swiss-Prot
Match: TCTP_CAEBR (Translationally-controlled tumor protein homolog OS=Caenorhabditis briggsae GN=tct-1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.643e-11
Identity = 46/143 (32.17%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   79 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAF-DKKQFVTYMKRFIKLLTPKLSEERQ-----EIFKKNIEGATKFLLSK--LSDLQFFVGE 480
            ML+Y+D+ T DEL SDSFP K  ++ +++E +G+ VV+   D+ + G+NPS               + +DIV   +L E   + D   F  Y+K+F+K +   + +  +     + FKK I+     LL+K    +L FF+GE
Sbjct:    1 MLIYKDIFTDDELSSDSFPMKLVDD-LIYEFKGRHVVRKEGDIILAGSNPSAEEGAEDEGSDEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNIIDHMEKNNRDKADVDAFKKKIQAWVVSLLAKDRFKNLAFFIGE 142          
BLAST of DN618344 vs. ExPASy Swiss-Prot
Match: TCTP_PLABA (Translationally-controlled tumor protein homolog OS=Plasmodium berghei (strain Anka) GN=TCTP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 46/154 (29.87%), Postives = 77/154 (50.00%), Query Frame = 1
Query:   79 MLVYQDLLTGDELLSDSF----PYKETE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAY 516
            M VY+D+ T DE+ SDS+    P+   E   I +EV+    ++G  D  I  N                  V+DIVD+F+L    +  KK++  Y+K F++ +   L E   +R  IFK   +   K +L+   D +F++GES+  +  L+++Y
Sbjct:    1 MKVYKDIFTNDEVCSDSYIQEDPFGNAEFREIAFEVKSNKRIKGNDDYGIADNSEDAVDGMGADVEH----VIDIVDSFQLTST-SLSKKEYSAYVKNFMQRILKHLEEKKPDRVNIFKTKAQPLIKHILTNFDDFEFYMGESLDMEAGLIYSY 149          
BLAST of DN618344 vs. ExPASy Swiss-Prot
Match: TCTP_IXOSC (Translationally-controlled tumor protein homolog OS=Ixodes scapularis GN=Tctp PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 50/147 (34.01%), Postives = 76/147 (51.70%), Query Frame = 1
Query:   79 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQ--GAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPK-----LSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDG 498
            ML+++D+LTGDE+ +DS  YK  ++  ++E+E + V +  G V +D GANPS                 +D+V   RL E   F K  +  Y+K + K L  K      SE      K  +  A K +L ++ D+QFF+GES + DG
Sbjct:    1 MLLFKDILTGDEMFTDSVKYKLVDD-CIFEIECEHVTRKVGEVALD-GANPSAEEVEEGTEEGTESG--LDLVLNMRLVE-TGFSKTDYKNYLKTYTKALMDKWKEDGKSEAEVNEAKSKLTEAVKKVLPRIGDMQFFLGESSNPDG 142          
The following BLAST results are available for this feature:
BLAST of DN618344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
TCTP_CAEEL1.186e-1132.87Translationally-controlled tumor protein homolog O... [more]
TCTP_PLAF71.550e-1129.87Translationally-controlled tumor protein homolog O... [more]
TCTP_PLAYO2.643e-1129.87Translationally-controlled tumor protein homolog O... [more]
TCTP_CAEBR2.643e-1132.17Translationally-controlled tumor protein homolog O... [more]
TCTP_PLABA3.452e-1129.87Translationally-controlled tumor protein homolog O... [more]
TCTP_IXOSC7.691e-1134.01Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618344 ID=DN618344; Name=DN618344; organism=Citrus sinensis; type=EST; length=517bp
CTGCGTCTCTCTCTCTCTCTCTCCAGTTTTCTCCGTTGATTATTTTTCTT
TTTTGTGTTCGCGAGAGAGACTGCAATCATGTTGGTCTATCAAGATCTCC
TCACCGGTGATGAGCTTCTCTCCGACTCTTTTCCCTACAAGGAAACTGAG
AATGGGATTCTGTGGGAAGTTGAGGGAAAGTGGGTTGTACAAGGAGCCGT
TGATGTTGACATTGGTGCAAATCCTTCTGCCGAAGGAGCTGATGAGGATG
AGGGTGTTGATGACCAAGCCGTGAAGGTGGTCGACATTGTCGACACATTC
AGGCTGCAGGAGCAACCTGCTTTTGACAAGAAGCAGTTTGTAACATACAT
GAAGAGATTCATCAAGTTGCTGACGCCCAAGCTGAGTGAGGAGAGGCAGG
AGATATTTAAGAAGAATATTGAGGGAGCGACCAAGTTCTTGCTCTCGAAG
CTCAGTGACCTTCAATTCTTTGTTGGGGAGAGCATGCATGATGATGGCTG
TCTTGTCTTTGCTTACT
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