DN618331

Overview
NameDN618331
Unique NameDN618331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.371e-40
Identity = 88/198 (44.44%), Postives = 122/198 (61.62%), Query Frame = 2
Query:  107 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----ITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKA 688
            N ++ N HF+KHW   +KTWF+QP                I PRP AG LR VV     +YN K R GRGF+L+ELKAAGI +  A TIG++VD RR N++ EGL++N  RLK YKAKL++FP++A   K GDS+ EEL  A Q++G  +P    IT ++P     +VT   +  + +  LR ERA++++ G R K+A
Sbjct:    6 NQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPR----QVTDAERKVEIFRLLRKERADKKYRGKREKRA 199          
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.131e-36
Identity = 83/174 (47.70%), Postives = 108/174 (62.07%), Query Frame = 2
Query:  167 FNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKA 688
            FNQP                I PRP AG LRP V  QT KYN +LR GRGF+L+ELKAAGI KK A  IG+SVD RR+N+S+E LQ NVQRLK Y++KL++FP++  K   GD+  EE+  ATQ++G  +P T          +T + +  K +D+LR  RA++R  G R KKA
Sbjct:    2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIKPEKARAITDEERKVKVFDRLRQARAHKRLAGKRAKKA 175          
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.340e-29
Identity = 79/194 (40.72%), Postives = 104/194 (53.61%), Query Frame = 2
Query:  107 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKA 688
            N  I   HF+KHWQ  VK  F+Q                 I PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFPR  +       APE    A QV        + +P  D+           A+  LR+ R+ ++  G R K+A
Sbjct:    6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIREKRA 187          
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.285e-29
Identity = 79/194 (40.72%), Postives = 104/194 (53.61%), Query Frame = 2
Query:  107 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKA 688
            N  I   HF+KHWQ  VK  F+Q                 I PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFPR  +       APE    A QV        + +P  D+           A+  LR+ R+ ++  G R K+A
Sbjct:    6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIREKRA 187          
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.898e-29
Identity = 79/190 (41.58%), Postives = 104/190 (54.74%), Query Frame = 2
Query:  122 NGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQ-GPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKA 688
            N HF+KHWQ  V+  F+Q                 I PRP    LRPVV   T+KYN K+RAGRGFTL ELKA GI  K A TIG+SVDHRR+N+S E   +NV RL+ YK+KLV+F ++ +          E+A+  QV      P+    P   L  V  ++    AY  LR+ R  +++ G R K+A
Sbjct:   11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTK--------ASEVASFEQVDVSATFPVEQPAPESGLRAV--EVPEQTAYRTLRLARNEKKYKGIREKRA 189          
BLAST of DN618331 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.648e-29
Identity = 76/187 (40.64%), Postives = 100/187 (53.48%), Query Frame = 2
Query:  128 HFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKA 688
            HF+KHWQ  VK  FNQ                 I PRP    LRPVV   T+KYN K+RAGRGFT  E+KAAG+    A TIG++VDHRR+N++ E  + NVQRLK Y++K++VFPR  +        PE      QV        + +P V+            AY  LR+ R+ +R+ G R K+A
Sbjct:   13 HFRKHWQERVKVHFNQAGKKASRRDARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGK-------VPE----TEQVLSTAAAFPIAQPAVETETRAVQDNGESAYRTLRMARSEKRYKGIREKRA 187          
The following BLAST results are available for this feature:
BLAST of DN618331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CAEEL8.371e-4044.4460S ribosomal protein L13 OS=Caenorhabditis elegan... [more]
RL13_LUMRU1.131e-3647.7060S ribosomal protein L13 OS=Lumbricus rubellus GN... [more]
RL13A_YEAST1.340e-2940.7260S ribosomal protein L13-A OS=Saccharomyces cerev... [more]
RL13B_YEAST2.285e-2940.7260S ribosomal protein L13-B OS=Saccharomyces cerev... [more]
RL13_CANAL3.898e-2941.5860S ribosomal protein L13 OS=Candida albicans GN=R... [more]
RL13_SACEX6.648e-2940.6460S ribosomal protein L13 OS=Saccharomyces exiguus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618331 ID=DN618331; Name=DN618331; organism=Citrus sinensis; type=EST; length=689bp
CCAAGCCTCACGCATCATATTCGTTCGTTTCGGCTTTGCTGCCGTCGAGA
CTGAGAGAAACGGAGATAGTCTTCTGCATTTCGCTCTGTAAACAAAAATG
AAGCACAACAATGTAATTCCAAATGGGCACTTTAAGAAGCATTGGCAGAA
CTATGTCAAGACTTGGTTTAACCAACCGGCTCGCAAAAATCGACGACGAG
TTGCTCGTCAAAAGAAGGCCGTTAAAATCTTCCCTCGCCCTACTGCTGGT
CCTCTTCGCCCCGTCGTTCATGGCCAGACTTTGAAATATAACATGAAATT
AAGGGCTGGCAGAGGCTTTACTCTTGAGGAACTCAAGGCTGCTGGAATTC
CCAAGAAACTGGCTCCAACAATTGGCGTTTCAGTCGATCATCGACGCAAG
AACCGTTCTCTTGAGGGTCTTCAATCTAATGTTCAGAGGCTGAAGACTTA
CAAGGCCAAGTTGGTTGTTTTCCCAAGACGTGCTCGCAAGTTTAAGGCTG
GTGATTCTGCTCCTGAGGAATTGGCAACAGCAACTCAAGTACAAGGACCT
TACATGCCCATTACTCTTGAGAAGCCTACTGTCGACCTTGTTAAGGTTAC
TCAAGATATGAAGTCCTTCAAGGCTTATGACAAGCTCCGGATTGAGCGTG
CGAACGAGCGCCATTTTGGTGCCAGGTTGAAGAAGGCTG
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