DN618326

Overview
NameDN618326
Unique NameDN618326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618326 vs. ExPASy Swiss-Prot
Match: RS7_ARCFU (30S ribosomal protein S7P OS=Archaeoglobus fulgidus GN=rps7p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32
Identity = 73/164 (44.51%), Postives = 108/164 (65.85%), Query Frame = 2
Query:  215 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 706
            ++ +F ++   +VQ++D +L  YI ++      YVPH  GR++   F K +  IVERL N +M  G N GKK++A  IVK A EII   T +NPIQV+VDA+IN+GPRE+  R+   G+   +AVD S  RRV+ A+  +  GAR +AF++ ++IA+CLADE+I
Sbjct:    9 ELLVFGKYDPSEVQISDPALESYICLEPK----YVPHNHGRHANVPFAKQKVFIVERLINKVMRKGHNTGKKILAYNIVKEAFEIIEKKTKKNPIQVLVDAIINAGPREEVVRLKYGGIAVPKAVDTSSSRRVDIALRNIAEGARRAAFKSKRSIAQCLADEII 168          
BLAST of DN618326 vs. ExPASy Swiss-Prot
Match: RS7_HALSA (30S ribosomal protein S7P OS=Halobacterium salinarium GN=rps7p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.216e-32
Identity = 73/173 (42.20%), Postives = 106/173 (61.27%), Query Frame = 2
Query:  185 QSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEL 703
            +S+D  +   + KLF +W   ++   D S   Y+ V      T V HT GR++ K+F+K++  IVERL N LM  G N GKK  A++IV+ A +I+H  TD+NPIQV+V AV N+ PRE+  R+   G+   QAVD +P RRV+QA+  L  GA  ++F+     AE LA++L
Sbjct:   17 ESEDTQEVAANAKLFGKWDVAEIHYEDPSTRRYLAV------TPVAHTMGRHAQKQFKKSEISIVERLANRLMKTGANAGKKQQALKIVRDAFDIVHERTDENPIQVLVSAVENAAPREETVRLKYGGISVPQAVDTAPQRRVDQALKFLADGAHSASFKTPTDAAEALANQL 183          
BLAST of DN618326 vs. ExPASy Swiss-Prot
Match: RS7_METBU (30S ribosomal protein S7P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps7p PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32
Identity = 66/162 (40.74%), Postives = 110/162 (67.90%), Query Frame = 2
Query:  221 KLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 706
            KLF +W   +V+V D  +  Y+ +    +   VPHT+G+++ ++F K+   IVERL N++M + +N GKK +A+RIV  A +I++  T +NP+QV+V+AV N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G+ ++AF++ ++ AECLA ELI
Sbjct:    3 KLFGKWDLTEVEVADAGIKRYVNL----DPVIVPHTSGKHARQQFNKSDITIVERLVNNVMRNAQNTGKKQIALRIVDEAFDIVNSKTKKNPVQVLVEAVSNAGPREEVVRLKYGGISVPKAVDTAPQRRVDHALRNISIGSNQTAFKSKRSAAECLASELI 160          
BLAST of DN618326 vs. ExPASy Swiss-Prot
Match: RS7_METMA (30S ribosomal protein S7P OS=Methanosarcina mazei GN=rps7p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.381e-31
Identity = 65/162 (40.12%), Postives = 107/162 (66.05%), Query Frame = 2
Query:  221 KLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 706
            K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK + +R V+ A +II+  T QNPIQ++VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G   +AF++ +++AECLA ELI
Sbjct:    6 KIFGKWDPTEVEVRDLGIKRYVSLAPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIINRKTQQNPIQILVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNAAAFKSKRSVAECLATELI 163          
BLAST of DN618326 vs. ExPASy Swiss-Prot
Match: RS7_METHJ (30S ribosomal protein S7P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps7p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.381e-31
Identity = 69/161 (42.86%), Postives = 101/161 (62.73%), Query Frame = 2
Query:  224 LFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 706
            LFNRW   +V + D  ++ Y+ +    N+  VPH+ GR + + F KA   IVERL N LM    N GKK +A+RIV+ A EI+H  T +NPI+V+ DAV N+GPRE+  R+   G+   ++VD +P+RRVN A+ L+  G   ++ +  K +A  LA+ELI
Sbjct:   12 LFNRWDTSEVTIRDPGIARYVNL----NSMMVPHSCGRLTRQEFHKANMLIVERLINQLMRTEVNTGKKQLAIRIVRDAFEIVHQKTKKNPIEVLCDAVANAGPREETVRLKYGGINVPKSVDTAPMRRVNTAVGLIAAGVYSASHKKKKPVANALAEELI 168          
BLAST of DN618326 vs. ExPASy Swiss-Prot
Match: RS7_METAC (30S ribosomal protein S7P OS=Methanosarcina acetivorans GN=rps7p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.381e-31
Identity = 65/162 (40.12%), Postives = 107/162 (66.05%), Query Frame = 2
Query:  221 KLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 706
            K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK + +R V+ A +I++  T QNPIQV+VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G   +AF++ +++AECLA ELI
Sbjct:    6 KIFGKWDPTEVEVKDLGIKRYVSL----TPVIVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIVNKKTKQNPIQVLVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNAAAFKSKRSVAECLATELI 163          
BLAST of DN618326 vs. ExPASy Swiss-Prot
Match: RS7_HALMA (30S ribosomal protein S7P OS=Haloarcula marismortui GN=rps7p PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.381e-31
Identity = 75/180 (41.67%), Postives = 104/180 (57.78%), Query Frame = 2
Query:  167 ATAVVTQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 706
            A A   +  +P   +   KLF  W   D++ +D S   YI V      T + HT GR++ K+F+K++  IVERL N LM    N GKK +A  IV  A E++H  TD+NPIQV+V AV NS PRE+  R+   G+   +AVD++P RRV+QA+  L  G    +F+   T AE LA +LI
Sbjct:    9 ADADAAEESEPETAR--AKLFGEWDITDIEYSDPSTERYITV------TPIAHTMGRHADKQFKKSEISIVERLINRLMQTDENTGKKQLATSIVTEAFELVHERTDENPIQVLVSAVENSAPREETVRLKYGGISVPKAVDVAPQRRVDQALKFLAEGVYGGSFKTTTTAAEALAQQLI 180          
BLAST of DN618326 vs. ExPASy Swiss-Prot
Match: RS7_METTP (30S ribosomal protein S7P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps7p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.767e-31
Identity = 64/163 (39.26%), Postives = 109/163 (66.87%), Query Frame = 2
Query:  218 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 706
            +K+F +W   +V++ D+S+  YI ++       V HT GR++ ++F+K++  +VERL N +M   +N G+K +A RIV+ A +IIH  T +NP+ V+V A+ N+GPRE+  R+   G+   +AVD +P RRV+ A+ L+  GA +++F++ ++I  CLADE+I
Sbjct:    1 MKVFGKWDASEVEIPDLSVKGYINLKPR----IVLHTGGRHAKQQFKKSELHVVERLINKMMRKEKNTGQKQIAYRIVEEAFDIIHSRTKENPLSVLVRAISNAGPREEVVRLKYGGITVPKAVDTAPQRRVDTALMLIAKGAWQASFKSRRSIQNCLADEII 159          
BLAST of DN618326 vs. ExPASy Swiss-Prot
Match: RS7_METBF (30S ribosomal protein S7P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps7p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.837e-31
Identity = 65/163 (39.88%), Postives = 106/163 (65.03%), Query Frame = 2
Query:  218 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 706
            +K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK   +R V+ A +I+   T QNPIQV+VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G   +AF++ +++AECLA ELI
Sbjct:    1 MKIFGKWDPTEVEVRDLGIKRYVSL----TPVIVPHSSGKHARQQFNKSEISIVERLANNLMRTEINTGKKQKTLRAVEEAFDIVSKKTKQNPIQVLVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNNAAFKSKRSVAECLATELI 159          
BLAST of DN618326 vs. ExPASy Swiss-Prot
Match: RS7_THEGJ (30S ribosomal protein S7P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps7p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.855e-29
Identity = 75/180 (41.67%), Postives = 103/180 (57.22%), Query Frame = 2
Query:  215 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 706
            ++K+F RW+ EDV VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV++ A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  T A+ LA+E+I
Sbjct:   14 ELKVFGRWSVEDVTVNDPSLRPYIALEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDVALKNIALGASIKCYRNKTTYAQALAEEII 189          
The following BLAST results are available for this feature:
BLAST of DN618326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_ARCFU3.994e-3244.5130S ribosomal protein S7P OS=Archaeoglobus fulgidu... [more]
RS7_HALSA5.216e-3242.2030S ribosomal protein S7P OS=Halobacterium salinar... [more]
RS7_METBU6.812e-3240.7430S ribosomal protein S7P OS=Methanococcoides burt... [more]
RS7_METMA3.381e-3140.1230S ribosomal protein S7P OS=Methanosarcina mazei ... [more]
RS7_METHJ3.381e-3142.8630S ribosomal protein S7P OS=Methanospirillum hung... [more]
RS7_METAC3.381e-3140.1230S ribosomal protein S7P OS=Methanosarcina acetiv... [more]
RS7_HALMA3.381e-3141.6730S ribosomal protein S7P OS=Haloarcula marismortu... [more]
RS7_METTP5.767e-3139.2630S ribosomal protein S7P OS=Methanosaeta thermoph... [more]
RS7_METBF9.837e-3139.8830S ribosomal protein S7P OS=Methanosarcina barker... [more]
RS7_THEGJ1.855e-2941.6730S ribosomal protein S7P OS=Thermococcus gammatol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618326 ID=DN618326; Name=DN618326; organism=Citrus sinensis; type=EST; length=711bp
CTCAGCGAGCGGCAGCCGATTCTTATTATTCCCTTTTCAAACCCCTTCAG
ATAAACTAACGCACGCTTTCTTTTTCTTCCGCTTTCTTCTCCATTGCTGA
TCATCTTGATTTCTTTTTAGTTTGAAAAACATTGTCTTTTAATATTTTGT
TGTGTTGGTAAGAATGGCGACTGCTGTAGTGACACAATCTCAAGACCCAT
CACAGCCTCAATACGATGTGAAGCTCTTCAATAGGTGGACTTTCGAGGAT
GTTCAGGTCAATGACATTTCATTGAGTGATTATATTGGAGTCCAAGCAGC
AAAAAATGCAACCTATGTACCTCACACAGCTGGGAGGTACTCAGTGAAGC
GGTTTAGGAAGGCACAGTGCCCAATTGTTGAGAGGCTCACAAACTCACTG
ATGATGCATGGAAGAAACAATGGCAAGAAATTGATGGCCGTCAGGATTGT
CAAGCACGCCATGGAAATCATTCACCTTTTGACTGACCAGAACCCAATTC
AGGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAGACGCTACC
CGCATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCGGTTGATATTTCCCC
ATTGCGCCGTGTGAATCAAGCAATCTATTTGCTGACCACTGGTGCTCGTG
AATCTGCTTTCCGTAATATCAAGACTATTGCGGAATGTTTGGCCGATGAA
CTCATTAATGC
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