DN618325

Overview
NameDN618325
Unique NameDN618325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 4.690e-66
Identity = 125/146 (85.62%), Postives = 137/146 (93.84%), Query Frame = -3
Query:  132 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 569
            KRFRKAQCPIVERLT SLMM GRNNGKKLMA RIVKH+ EIIHLLT +NP+Q++V A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   83 KRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 2.327e-65
Identity = 120/146 (82.19%), Postives = 139/146 (95.21%), Query Frame = -3
Query:  132 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 569
            KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+H+ EI+HLLT +NP+Q++ +A+ NSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE++FRNIK+IAECLADELINAA+GSSNSYAIKKKDE+ERVAK+NR
Sbjct:   65 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELERVAKSNR 210          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 5.185e-65
Identity = 121/146 (82.88%), Postives = 137/146 (93.84%), Query Frame = -3
Query:  132 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 569
            KRFRKAQCPIVERLT+ LMM GR+NGKKL+A RIVKHA EIIHLLT +NP+QV V+A++NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRNIKT+AECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   85 KRFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 240.736 bits (613), Expect = 3.716e-63
Identity = 118/146 (80.82%), Postives = 134/146 (91.78%), Query Frame = -3
Query:  132 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 569
            KRFRKAQCPI+ERLTNSLMM+GRNNGKKL AVRI+KH ++II++LTDQNPIQV+VDA+ N+GPRED TR+G  G  RRQAVD+SPLRRVNQAI LLT GARE+AFRNIKTIAE LA+ELINAAKGSS SYAIKKKDE+ERVAK+NR
Sbjct:   80 KRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 225          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.412e-62
Identity = 119/146 (81.51%), Postives = 136/146 (93.15%), Query Frame = -3
Query:  132 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 569
            KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E+INAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   58 KRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.412e-62
Identity = 119/146 (81.51%), Postives = 136/146 (93.15%), Query Frame = -3
Query:  132 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 569
            KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E+INAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   58 KRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.251e-59
Identity = 109/145 (75.17%), Postives = 132/145 (91.03%), Query Frame = -3
Query:  132 RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 566
            RFRKAQCPIVERL NS+MM GRN GKK+MAVRI++ A EII+LLTD+NP+QV+V+AV+NSGPRED+TRIGSAG VRRQAVD+SP+RRVN A+YLLT G R +AFRNI+T+AECLADELINA+KGS NSY+IK+KD +ER AK++R
Sbjct:   46 RFRKAQCPIVERLANSMMMFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTAKSHR 190          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.607e-50
Identity = 92/146 (63.01%), Postives = 122/146 (83.56%), Query Frame = -3
Query:  132 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 569
            K FRK QCPIVERL   +M HG+N+GKKL+A+R+V+ + EIIHLLT++NPIQV+VDA+IN+ PRED+TR+G+ G VR QAVD+SPLRR+N A+YLL  G R  AFRN K++AECLADE++NA+K  + S+AI KK+++ERVA +NR
Sbjct:    3 KPFRKIQCPIVERLVCCMMQHGKNSGKKLLAMRVVEESFEIIHLLTEKNPIQVLVDAIINASPREDSTRVGTGGNVRGQAVDVSPLRRINHALYLLIMGCRCGAFRNSKSLAECLADEIVNASKSYTGSFAIMKKEDLERVANSNR 148          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 9.847e-40
Identity = 80/142 (56.34%), Postives = 108/142 (76.06%), Query Frame = -3
Query:  132 KAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 557
            KA+ PI ER   SLM HGRN+GKK +A+ I + A  IIH +T +NP+QV+VDA++NSGPRED  RIG AG +RR +VD+SPL+R++ AI  L+ G R ++FRN  T+AE +A+ELI A+  S NSYA+ KK EIER+A++NR
Sbjct:   67 KARIPIAERFVCSLMRHGRNSGKKRLAINIFEDACFIIHSMTKKNPLQVLVDAIVNSGPREDTARIGRAGSMRRTSVDVSPLKRISIAISNLSAGIRNASFRNRITLAEAIANELIAASTNSQNSYAVNKKKEIERIAQSNR 208          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.422e-38
Identity = 81/146 (55.48%), Postives = 106/146 (72.60%), Query Frame = -3
Query:  132 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 569
            +RF KA+ PIVERL N LM  GRN GKK +A  IVK A +II+  T +NPIQV+V A+ NS PRED T+I   G+  R +VD++P RRV+QA+  +  GAR+ AF N K I ECLA+ELI AA+G   SYAI++K+EIER+A ++R
Sbjct:   60 RRFGKAEVPIVERLMNKLMRPGRNGGKKHLAYNIVKTAFDIIYFETGENPIQVLVKAIENSAPREDTTKITYGGITYRVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEELILAARGDPRSYAIRQKEEIERIALSSR 205          
The following BLAST results are available for this feature:
BLAST of DN618325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RS5A_DROME4.690e-6685.6240S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_PODCA2.327e-6582.1940S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]
RS5B_DROME5.185e-6582.8840S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_YEAST3.716e-6380.8240S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS5B_SCHPO1.412e-6281.5140S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO1.412e-6281.5140S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS5_DICDI4.251e-5975.1740S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5_ENTHI3.607e-5063.0140S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]
RS5_ENCCU9.847e-4056.3440S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]
RS7_AERPE1.422e-3855.4830S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618325 ID=DN618325; Name=DN618325; organism=Citrus sinensis; type=EST; length=571bp
TTTTTTTTTTTTTAATCCGCAAAAATATCGACAAAACATTGTCCAAAGTT
TGAGAAAAAAATAATAAAAAACAAAACATTGTCCAAAGTTTGAGAAAAAA
TAATAAAAAACAAAACATTGTCCAAAGTTCAGCGATTGGCCTTAGCAACT
CGCTCGATCTCGTCCTTCTTCTTGATGGCATAGCTGTTAGATGAACCCTT
GGCAGCATTAATGAGTTCATCGGCCAAACATTCCGCAATAGTCTTGATAT
TACGGAAAGCAGATTCACGAGCACCAGTGGTCAGCAAATAGATTGCTTGA
TTCACACGGCGCAATGGGGAAATATCAACCGCCTGACGCCTAACAACACC
AGCAGATCCAATGCGGGTAGCGTCTTCCCTTGGACCACTGTTGATGACAG
CATCAACAATGACCTGAATTGGGTTCTGGTCAGTCAAAAGGTGAATGATT
TCCATGGCGTGCTTGACAATCCTGACGGCCATCAATTTCTTGCCATTGTT
TCTTCCATGCATCATCAGTGAGTTTGTGAGCCTCTCAACAATTGGGCACT
GTGCCTTCCTAAACCGCTTCA
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