DN618325

Overview
NameDN618325
Unique NameDN618325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS7_HALWD (30S ribosomal protein S7P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps7p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.380e-25
Identity = 59/146 (40.41%), Postives = 92/146 (63.01%), Query Frame = -3
Query:  132 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 569
            K+F K++  +VERL N LM    N G K   + IV+ A + IH  T++NP+QV+V  V N+ PRE+  R+   G+   QAVD++P RRV+QA+  +  G +  ++++ ++ A+ LA  +I AA     SYA+ +K+E ERVA+A R
Sbjct:   82 KQFEKSKISVVERLINRLMQTEDNTGHKQKTMNIVEDAFDTIHNRTEENPVQVLVRGVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIADGTQRGSYKSAQSAADSLAQVIIGAANYDVQSYAVGQKEESERVAEAAR 227          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS7_THECE (30S ribosomal protein S7P OS=Thermococcus celer GN=rps7p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.016e-25
Identity = 66/162 (40.74%), Postives = 91/162 (56.17%), Query Frame = -3
Query:  132 KRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 569
            K F KA   IVERL N +M  G  +                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  + A+ LA+E+I AA     ++A  +K+EIER+A+++R
Sbjct:   54 KAFGKANVHIVERLINKVMRSGATSHKAGGHFMRRDDRSLMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANADPKTFAYSRKEEIERIAQSSR 215          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS7_PYRFU (30S ribosomal protein S7P OS=Pyrococcus furiosus GN=rps7p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.245e-25
Identity = 68/162 (41.98%), Postives = 92/162 (56.79%), Query Frame = -3
Query:  132 KRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 569
            K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +RN  + AE LA+E+I AA     SYA  KK EIER+A+++R
Sbjct:   54 KHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEQRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRNKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS7_PYRHO (30S ribosomal protein S7P OS=Pyrococcus horikoshii GN=rps7p PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.993e-24
Identity = 68/162 (41.98%), Postives = 91/162 (56.17%), Query Frame = -3
Query:  132 KRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 569
            K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISPLRR++ A+  +  GA    +R   + AE LA+E+I AA     SYA  KK EIER+A+++R
Sbjct:   57 KHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS7_PYRAB (30S ribosomal protein S7P OS=Pyrococcus abyssi GN=rps7p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.603e-24
Identity = 67/162 (41.36%), Postives = 91/162 (56.17%), Query Frame = -3
Query:  132 KRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 569
            K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +R   + AE LA+E+I AA     SYA  KK EIER+A+++R
Sbjct:   54 KHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS7_NANEQ (30S ribosomal protein S7P OS=Nanoarchaeum equitans GN=rps7p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.094e-22
Identity = 66/156 (42.31%), Postives = 87/156 (55.77%), Query Frame = -3
Query:  132 RFRKAQCPIVERLTNSLMMHGR-----------NNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 566
            RF KA+ PI+ERL   LM  G              GKK  A +I+    EII   T QNP++V V A+ N+ PRE+ T I   G    +AVD SP RRV+ AI  +  GA   + +   +I E LA+E+INA   S  SYAIK+K EIE+ A++ R
Sbjct:   43 RFGKAKIPIIERLAGRLMTSGHLGKKHKWTSEHQTGKKYNAYKIIIRTFEIIEKRTKQNPLKVFVKAIENAAPREETTTIEYGGARYPKAVDCSPQRRVDLAIRHMVWGAFHGSRKKPISIEEALAEEIINAYNNSLKSYAIKRKLEIEKTAESAR 198          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS7_AZOC5 (30S ribosomal protein S7 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = -3
Query:  132 IVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 542
            IV R  NS+M     +GKK +A  IV  A++++      NP+ + V A+ N  P  +       G   +  V++   RR   AI  L   AR    RN KT+ E L+ EL++AA    N  A+KK+++  R+A+ANR
Sbjct:   22 IVSRFMNSIM----RDGKKSVAESIVYGALDVVEAKAKSNPLDLFVTALENVAPAVEVRSRRVGGATYQVPVEVRTERRQTLAIRWLIASARA---RNEKTMVERLSAELLDAANNRGN--AVKKREDTHRMAEANR 149          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS7_METPP (30S ribosomal protein S7 OS=Methylibium petroleiphilum (strain PM1) GN=rpsG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 40/122 (32.79%), Postives = 74/122 (60.66%), Query Frame = -3
Query:  132 NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 497
            +GKK +A RI+  A+E +    +++P++V + A+ N  P  +       G   +  V++ P+RR+  A+  L   AR+   R+ K++A+ LA+EL+ A++G     A+KK+DE+ R+A+AN+
Sbjct:   33 SGKKAVAERIIYGALETVEKKANRDPLEVFITALNNVKPMVEVKSRRVGGANYQVPVEVRPVRRMALAMRWLKESARK---RSEKSMAQRLANELLEASEGRGG--AMKKRDEVHRMAEANK 149          
BLAST of DN618325 vs. ExPASy Swiss-Prot
Match: RS7_RHOPB (30S ribosomal protein S7 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = -3
Query:  132 IVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 542
            I+ +  NS+M  G    KK +A  IV  A+EII   T Q P+ V   A+ N  P  +       G   +  V++  +RR    I  L + AR+   RN KT+ E L+ EL++A+ G  N  A+KK++++ R+A+ANR
Sbjct:   22 ILTKFMNSVMYAG----KKSVAEGIVYGALEIIEAKTKQGPLPVFEQALENVMPTIEVRSRRVGGATYQVPVEVRSVRRQALGIRWLISAARD---RNEKTMTERLSAELLDASNGRGN--AVKKREDVHRMAEANR 149          
The following BLAST results are available for this feature:
BLAST of DN618325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RS7_HALWD1.380e-2540.4130S ribosomal protein S7P OS=Haloquadratum walsbyi... [more]
RS7_THECE4.016e-2540.7430S ribosomal protein S7P OS=Thermococcus celer GN... [more]
RS7_PYRFU5.245e-2541.9830S ribosomal protein S7P OS=Pyrococcus furiosus G... [more]
RS7_PYRHO1.993e-2441.9830S ribosomal protein S7P OS=Pyrococcus horikoshii... [more]
RS7_PYRAB2.603e-2441.3630S ribosomal protein S7P OS=Pyrococcus abyssi GN=... [more]
RS7_NANEQ1.094e-2242.3130S ribosomal protein S7P OS=Nanoarchaeum equitans... [more]
RS7_AZOC54.311e-1134.3130S ribosomal protein S7 OS=Azorhizobium caulinoda... [more]
RS7_METPP5.630e-1132.7930S ribosomal protein S7 OS=Methylibium petroleiph... [more]
RS7_RHOPB7.353e-1135.0430S ribosomal protein S7 OS=Rhodopseudomonas palus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618325 ID=DN618325; Name=DN618325; organism=Citrus sinensis; type=EST; length=571bp
TTTTTTTTTTTTTAATCCGCAAAAATATCGACAAAACATTGTCCAAAGTT
TGAGAAAAAAATAATAAAAAACAAAACATTGTCCAAAGTTTGAGAAAAAA
TAATAAAAAACAAAACATTGTCCAAAGTTCAGCGATTGGCCTTAGCAACT
CGCTCGATCTCGTCCTTCTTCTTGATGGCATAGCTGTTAGATGAACCCTT
GGCAGCATTAATGAGTTCATCGGCCAAACATTCCGCAATAGTCTTGATAT
TACGGAAAGCAGATTCACGAGCACCAGTGGTCAGCAAATAGATTGCTTGA
TTCACACGGCGCAATGGGGAAATATCAACCGCCTGACGCCTAACAACACC
AGCAGATCCAATGCGGGTAGCGTCTTCCCTTGGACCACTGTTGATGACAG
CATCAACAATGACCTGAATTGGGTTCTGGTCAGTCAAAAGGTGAATGATT
TCCATGGCGTGCTTGACAATCCTGACGGCCATCAATTTCTTGCCATTGTT
TCTTCCATGCATCATCAGTGAGTTTGTGAGCCTCTCAACAATTGGGCACT
GTGCCTTCCTAAACCGCTTCA
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