DN618297

Overview
NameDN618297
Unique NameDN618297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 6.845e-12
Identity = 35/103 (33.98%), Postives = 57/103 (55.34%), Query Frame = -1
Query:  181 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQ 489
            I+S + F  +L    D  +  +  F+A WCGPCK I P    LS K+ +V   ++D+D    +   S+  +  +PTF FF+ G+KV E  GA+  +L+ T+ +
Sbjct:    5 IDSKDAFQEALDAAGDKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD--CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = -1
Query:  178 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 489
            IES   F  +L    +  +  +  F+A WCGPCK I P    LS K+ +V   ++D+D    +   ++  +  +PTF FF+ G+KV+E  GA+  +L+ T+ +L
Sbjct:    5 IESKYAFQEALNSAGEKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD--CQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATINEL 104          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.168e-11
Identity = 35/104 (33.65%), Postives = 57/104 (54.81%), Query Frame = -1
Query:  178 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 489
            IES   F  +L    +  +  +  F+A WCGPCK I P    LS K+ +V   ++D+D    +   ++  +  +PTF FF+ G+KV E  GA+  +L+ T+ +L
Sbjct:    5 IESKYAFQEALNSAGEKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD--CQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = -1
Query:  196 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLK 501
            +++VI+S   +++ L K K++  P +  FTA WCGPCK I P+   LS  +   V   K+D+D   + +      I+A+PTF  ++ G K  ++VGA   +LK
Sbjct:    4 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVD--AVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLK 104          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 32/98 (32.65%), Postives = 60/98 (61.22%), Query Frame = -1
Query:  196 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLK 489
            ++S  E++S+L     D L  + +F A WCGPCK I P+I + + ++     YK+D+D+  +     K  +S++PT +F++ G++V  +VGA+ + +K
Sbjct:    5 LKSASEYDSALAS--GDKLVVVDFF-ATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDE--VSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIK 97          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.601e-11
Identity = 31/106 (29.25%), Postives = 56/106 (52.83%), Query Frame = -1
Query:  193 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKT 510
            G   ++ + S E++   + +        +  FTA+WCGPC+ + P+  +L+ K P     K+D+D+  L+    + ++ A+PTFLF + G+    +VGA    L T
Sbjct:   16 GAGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDE--LKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTT 119          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.601e-11
Identity = 35/104 (33.65%), Postives = 57/104 (54.81%), Query Frame = -1
Query:  178 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 489
            IES   F  +L    +  +  +  F+A WCGPCK I P    LS K+ +V   ++D+D    +   ++  +  +PTF FF+ G+KV E  GA+  +L+ T++ L
Sbjct:    5 IESKSAFQEALNSAGEKLV--VVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD--CQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATIKGL 104          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.397e-11
Identity = 34/106 (32.08%), Postives = 57/106 (53.77%), Query Frame = -1
Query:  181 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQ 498
            + +IES E F  +L    D  +  +  F+A WCGPCK I P    L  K+ +V   ++D+D    +   +   +  +PTF F++ G+KV E  GA+  +L+ T+ +
Sbjct:    2 VKLIESKEAFQEALAAAGDKLV--VVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDD--CQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITE 103          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.397e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = -1
Query:  184 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTME 489
            I+   + N  L K     +  +  F A WCGPCK I P + ELS ++   V   K+D+D+   E    + NIS++PTF+F ++G KV E  GA+  RL+  ++
Sbjct:    5 IKDKADLNGQLTKASGKLV--VLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDE--CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLEDVIK 103          
BLAST of DN618297 vs. ExPASy Swiss-Prot
Match: THIO1_DICDI (Thioredoxin-1 OS=Dictyostelium discoideum GN=trxA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.397e-11
Identity = 39/107 (36.45%), Postives = 64/107 (59.81%), Query Frame = -1
Query:  184 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTME 504
            + ++ + S EE +  L   +D+ +  +  F+A WCGPC+ I PV  +LS +    T   +DID+  +   +SK  I +VPTF F+++G KV+E  GA  S L++T+E
Sbjct:    3 NRVIHVSSCEELDKHL---RDERV--VVDFSAVWCGPCRAISPVFEKLSNEFITFTFLHVDIDKLNVHPIVSK--IKSVPTFHFYRNGSKVSEFSGASESILRSTLE 102          
The following BLAST results are available for this feature:
BLAST of DN618297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
THIO_CALJA6.845e-1233.98Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_SHEEP8.940e-1233.65Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_BOVIN1.168e-1133.65Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
TRXH_CHLRE1.992e-1134.95Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
TRX2_YEAST1.992e-1132.65Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
TRXH_WHEAT2.601e-1129.25Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
THIO_HORSE2.601e-1133.65Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
THIO_RAT3.397e-1132.08Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO2_DROYA3.397e-1135.92Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO1_DICDI3.397e-1136.45Thioredoxin-1 OS=Dictyostelium discoideum GN=trxA ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02G01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618297 ID=DN618297; Name=DN618297; organism=Citrus sinensis; type=EST; length=513bp
AAGGGCTTTTCAATAATATTACAAAAACAACGTCAACTATGAAAAATGCA
GGCTGGACAGGGTTCGTCTTGAAGAGCTAATGTTTGTTGTAAGGCCAGCA
AGGAGCCCAACAGCCCCAATCTTTCTTCAGCAAGCTCATCTGATCAGGTA
TCCTTACTTCATTCAATCCTTCTTGTAAAGTTGTTCCATAGTTGTCTTCA
ACCGTGAGACATCAGCACCAACTATTTCAGCCACCTTTTCTCCATGTTGA
AAGAACAAGAATGTTGGCACAGCACTGATGTTTAACTTGCTTAATGTGCT
TTCAAGTCCTTTCTGGTCAATGTCAATCTTATATGTTGTTACATGAGGGT
GTTTTGCACTCAACTCCCCTATGACAGGCCATATAAACTTGCAGGGGCCA
CACCAAGCAGCAGTGAAATAAAATATCGCTGGCAGAGAATCATCTTTAAC
TTTGCCAAGTGAGCTATTGAACTCTTCCCCTGACTCGATGACTAGAATAT
TTGATGGACCATC
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