DN618247

Overview
NameDN618247
Unique NameDN618247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACP_SHIDS (Acyl carrier protein OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=acpP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = -3 
Query:  283 VDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 459
            V   +VT NA    DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+D+I  H
Sbjct:   18 VKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 76
[Close]
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACP_SHIBS (Acyl carrier protein OS=Shigella boydii serotype 4 (strain Sb227) GN=acpP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = -3 
Query:  283 VDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 459
            V   +VT NA    DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+D+I  H
Sbjct:   18 VKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 76
[Close]
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACP_SHIB3 (Acyl carrier protein OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=acpP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = -3 
Query:  283 VDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 459
            V   +VT NA    DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+D+I  H
Sbjct:   18 VKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 76
[Close]
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACP_SALTY (Acyl carrier protein OS=Salmonella typhimurium GN=acpP PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = -3 
Query:  283 VDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 459
            V   +VT NA    DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+D+I  H
Sbjct:   18 VKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 76
[Close]
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACP_SALTI (Acyl carrier protein OS=Salmonella typhi GN=acpP PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = -3 
Query:  283 VDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 459
            V   +VT NA    DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+D+I  H
Sbjct:   18 VKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 76
[Close]
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACP_SALSV (Acyl carrier protein OS=Salmonella schwarzengrund (strain CVM19633) GN=acpP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = -3 
Query:  283 VDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 459
            V   +VT NA    DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+D+I  H
Sbjct:   18 VKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 76
[Close]
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACP_SALPK (Acyl carrier protein OS=Salmonella paratyphi A (strain AKU_12601) GN=acpP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = -3 
Query:  283 VDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 459
            V   +VT NA    DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+D+I  H
Sbjct:   18 VKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 76
[Close]
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACP_SALPC (Acyl carrier protein OS=Salmonella paratyphi C (strain RKS4594) GN=acpP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = -3 
Query:  283 VDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 459
            V   +VT NA    DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+D+I  H
Sbjct:   18 VKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 76
[Close]
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACP_SALPB (Acyl carrier protein OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=acpP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = -3 
Query:  283 VDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 459
            V   +VT NA    DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+D+I  H
Sbjct:   18 VKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 76
[Close]
BLAST of DN618247 vs. ExPASy Swiss-Prot
Match: ACP_SALPA (Acyl carrier protein OS=Salmonella paratyphi A GN=acpP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = -3 
Query:  283 VDLSKVTVNAHSXNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 459
            V   +VT NA    DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+D+I  H
Sbjct:   18 VKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 76
The following BLAST results are available for this feature:
BLAST of DN618247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
ACP_SHIDS1.913e-1261.02Acyl carrier protein OS=Shigella dysenteriae serot... [more]
ACP_SHIBS1.913e-1261.02Acyl carrier protein OS=Shigella boydii serotype 4... [more]
ACP_SHIB31.913e-1261.02Acyl carrier protein OS=Shigella boydii serotype 1... [more]
ACP_SALTY1.913e-1261.02Acyl carrier protein OS=Salmonella typhimurium GN=... [more]
ACP_SALTI1.913e-1261.02Acyl carrier protein OS=Salmonella typhi GN=acpP P... [more]
ACP_SALSV1.913e-1261.02Acyl carrier protein OS=Salmonella schwarzengrund ... [more]
ACP_SALPK1.913e-1261.02Acyl carrier protein OS=Salmonella paratyphi A (st... [more]
ACP_SALPC1.913e-1261.02Acyl carrier protein OS=Salmonella paratyphi C (st... [more]
ACP_SALPB1.913e-1261.02Acyl carrier protein OS=Salmonella paratyphi B (st... [more]
ACP_SALPA1.913e-1261.02Acyl carrier protein OS=Salmonella paratyphi A GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02E23_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618247 ID=DN618247; Name=DN618247; organism=Citrus sinensis; type=EST; length=473bp
AGAACATATATGATGAGTAGTGAAGAAATACCAGACCATTCCAATCTTCC
AATTTAATGGAAAGCATTTTCGACGCGGCAAGTCTCCCAAAAACAATACT
CTTCAAGCAGAGTTCAAATGGGGTCGGAAAACCAGAAAGGCTTTTAAAGT
TTACTCGTTTTTTAAGGAACAAAAATTTTAGGTACCGGGATAAGAGAATT
CTAATGCTGCTGCTAATTCTGAACATCAAAAGAGTGAAAATAGCATCGTA
GGGCTTCATAGTTTCCCCTACTTAGCCTGAGGATGAGAAGCAATGAAATC
GACAGCCATATTGATGGTATTGATCTTGTCTGCCTCATTATCTGGGATCT
CGAATCCGAATTCTTCTTCAAGTGCCATCACGACCTCCACAGTGTCCAAA
CTATCCAACCCAAGATCATTCTNGGAATGGGCATTAACCGTAACCTTGGA
AAGATCAACTTTCTGGAAGTTTT
back to top