DN618246

Overview
NameDN618246
Unique NameDN618246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_ALCBS (Acyl carrier protein OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=acpP PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.418e-14
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 386
            S + +RV  ++     V P  V   A F  DLG DSLDTVE+VMALEEEF  EIPD EA+KI+T+  AVD+I +H
Sbjct:    2 SSIEERVNKIIVEQLGVKPEDVKSEASFVEDLGADSLDTVELVMALEEEFETEIPDEEAEKISTVQSAVDYIKAH 76          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_VIBVY (Acyl carrier protein OS=Vibrio vulnificus (strain YJ016) GN=acpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQ 392
            S + +RV  ++     VD S+V   A F +DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+D++ ++ Q
Sbjct:    2 SNLEERVKKIIVEQLGVDESEVKNEASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYVTANAQ 78          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_VIBVU (Acyl carrier protein OS=Vibrio vulnificus GN=acpP PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQ 392
            S + +RV  ++     VD S+V   A F +DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+D++ ++ Q
Sbjct:    2 SNLEERVKKIIVEQLGVDESEVKNEASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYVTANAQ 78          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_PSEP1 (Acyl carrier protein OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=acpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 386
            S + +RV  +V     V   +VT+   F +DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+D++ +H
Sbjct:    2 STIEERVKKIVAEQLGVKEEEVTIEKSFVDDLGADSLDTVELVMALEEEFETEIPDEEAEKITTVQAAIDYVKAH 76          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_PSEMY (Acyl carrier protein OS=Pseudomonas mendocina (strain ymp) GN=acpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQ 392
            S + +RV  +V     V   +VT +A F  DLG DSLDTVE+VMALEEEF  EIPD +A+KI T+  A+D++ +H Q
Sbjct:    2 STIEERVKKIVAEQLGVKEEEVTNSASFVEDLGADSLDTVELVMALEEEFETEIPDEQAEKITTVQEAIDYVTAHAQ 78          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_PECCP (Acyl carrier protein OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=acpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQ 392
            S + +RV  ++     V   +V  NA F +DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+DFI ++ Q
Sbjct:    2 STIEERVKKIIVEQLGVKQEEVVNNASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDFIQANQQ 78          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_GRABC (Acyl carrier protein OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=acpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQA 395
            SEV D+V  +V     V+ SKVT  A F +DLG DSLDTVE+VMA EE FG EIP++ A+KI+T+  AV++I     A
Sbjct:    2 SEVADKVKKIVVEHLGVEESKVTPEASFIDDLGADSLDTVELVMAFEEAFGVEIPEDAAEKISTVKDAVEYIEKQKAA 79          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_ERWCT (Acyl carrier protein OS=Erwinia carotovora subsp. atroseptica GN=acpP PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQ 392
            S + +RV  ++     V   +V  NA F +DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+DFI ++ Q
Sbjct:    2 STIEERVKKIIVEQLGVKQEEVVNNASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDFIQANQQ 78          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_CYAA5 (Acyl carrier protein OS=Cyanothece sp. (strain ATCC 51142) GN=acpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  165 EVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQAK 398
            E+ ++V S+V    +V+   VT  A+F NDLG DSLDTVE+VMALEEEF  EIPD  A+ I T+  AVD+I    QAK
Sbjct:    4 EIFEKVKSIVVEQLEVEEDTVTPEANFANDLGADSLDTVELVMALEEEFDIEIPDEAAENIGTVQAAVDYIEKE-QAK 80          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_ACIBL (Acyl carrier protein OS=Acidobacteria bacterium (strain Ellin345) GN=acpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQAK*GK 407
            + V ++V  ++     VD  +VT NA F +DLG DSLDTVE+VMA EE F  EIPD +A+KI T+  AVD+I +H  AK GK
Sbjct:    2 ASVEEKVKQIIVEQLGVDEGEVTPNASFVDDLGADSLDTVELVMAFEEAFEIEIPDEDAEKIRTVKDAVDYITAH--AKGGK 81          
The following BLAST results are available for this feature:
BLAST of DN618246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
ACP_ALCBS3.418e-1453.33Acyl carrier protein OS=Alcanivorax borkumensis (s... [more]
ACP_VIBVY4.464e-1450.65Acyl carrier protein OS=Vibrio vulnificus (strain ... [more]
ACP_VIBVU4.464e-1450.65Acyl carrier protein OS=Vibrio vulnificus GN=acpP ... [more]
ACP_PSEP14.464e-1450.67Acyl carrier protein OS=Pseudomonas putida (strain... [more]
ACP_PSEMY4.464e-1450.65Acyl carrier protein OS=Pseudomonas mendocina (str... [more]
ACP_PECCP4.464e-1451.95Acyl carrier protein OS=Pectobacterium carotovorum... [more]
ACP_GRABC4.464e-1452.56Acyl carrier protein OS=Granulibacter bethesdensis... [more]
ACP_ERWCT4.464e-1451.95Acyl carrier protein OS=Erwinia carotovora subsp. ... [more]
ACP_CYAA54.464e-1453.85Acyl carrier protein OS=Cyanothece sp. (strain ATC... [more]
ACP_ACIBL4.464e-1451.22Acyl carrier protein OS=Acidobacteria bacterium (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02E23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618246 ID=DN618246; Name=DN618246; organism=Citrus sinensis; type=EST; length=591bp
GGCAGCAGATACTGAAAATGGCGGCGGCGAGAGGTGCCTTGCTAAAGTAC
CTGAGAGTGAACGTGGCCACCGTGCAACGAAACCCTAGCCCCTTTTCTCT
CTCATTCAACTCCATACGCCGCTGTTTCGCGGAAGAGGTCAGGGGCTCTT
TCCTCGACAAATCTGAAGTCACCGATCGCGTCATTTCCGTCGTTAAAAAC
TTCCAGAAAGTTGATCCTTCCAAGGTTACGGTTAATGCCCATTTCCAGAA
TGATCTTGGGTTGGATAGTTTGGACACTGTGGAGGTCGTGATGGCACTTG
AAGAAGAATTCGGATTCGAGATCCCAGATAATGAGGCAGACAAGATCAAT
ACCATCAATATGGCTGTCGATTTCATTGCTTCTCATCCTCAGGCTAAGTA
GGGGAAACTATGAAGCCCTACGATGCTATTTTCACTCTTTTGATGTTCAG
AATTAGCAGCAGCATTAGAATTCTCTTATCCCGGTACCTAANATTTTTGT
TCCTTAAAAAACGAGTAAACTTTAAAAGCCTTTCTGGTTTTCCGACCCCA
TTTGAACTCTGCTTGAAGAGTATTGTTTTTGGGAGACTTGC
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