DN618246

Overview
NameDN618246
Unique NameDN618246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACPM_DICDI (Acyl carrier protein, mitochondrial OS=Dictyostelium discoideum GN=ndufab1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 3
Query:  153 LDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQAK 398
            + + E+TDRVI VV  + KV    VT    F+ +LGLDSLD+ ++++A+EEEFG EIPD EADKI +    + ++   P AK
Sbjct:   40 ISEKEITDRVIGVVSQYDKVSGKTVTPTTTFK-ELGLDSLDSADILVAVEEEFGIEIPDEEADKITSCAETISYLRKTPTAK 120          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP1_PSEAE (Acyl carrier protein 1 OS=Pseudomonas aeruginosa GN=acpP1 PE=3 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASHPQ 392
            S + +RV  +V     V   +VT +A F  DLG DSLDTVE+VMALEEEF  EIPD +A+KI T+  A+D+I +H Q
Sbjct:    2 STIEERVKKIVAEQLGVKEEEVTNSASFVEDLGADSLDTVELVMALEEEFETEIPDEKAEKITTVQEAIDYIVAHQQ 78          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_ZYMMO (Acyl carrier protein OS=Zymomonas mobilis GN=acpP PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 386
            S+  +R+  +V     V+P KV  NA F +DLG DSLD +E+VMA EEEFG EIPD+  +KI T+  AV +I  H
Sbjct:    2 SDTAERIKKIVVEHLGVEPDKVVENASFLDDLGADSLDIIELVMAFEEEFGVEIPDDSVEKIGTVKDAVSYIDEH 76          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_XANCP (Acyl carrier protein OS=Xanthomonas campestris pv. campestris GN=acpP PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 386
            S + +RV  +V     V   +VT +A F +DLG DSLDTVE+VMALEEEF  EIPD EA+KI ++  A+D++ +H
Sbjct:    2 STIEERVKKIVVEQLGVKEEEVTTSASFVDDLGADSLDTVELVMALEEEFECEIPDEEAEKITSVQQAIDYVKAH 76          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_XANCB (Acyl carrier protein OS=Xanthomonas campestris pv. campestris (strain B100) GN=acpP PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 386
            S + +RV  +V     V   +VT +A F +DLG DSLDTVE+VMALEEEF  EIPD EA+KI ++  A+D++ +H
Sbjct:    2 STIEERVKKIVVEQLGVKEEEVTTSASFVDDLGADSLDTVELVMALEEEFECEIPDEEAEKITSVQQAIDYVKAH 76          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_XANC8 (Acyl carrier protein OS=Xanthomonas campestris pv. campestris (strain 8004) GN=acpP PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 386
            S + +RV  +V     V   +VT +A F +DLG DSLDTVE+VMALEEEF  EIPD EA+KI ++  A+D++ +H
Sbjct:    2 STIEERVKKIVVEQLGVKEEEVTTSASFVDDLGADSLDTVELVMALEEEFECEIPDEEAEKITSVQQAIDYVKAH 76          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_XANC5 (Acyl carrier protein OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=acpP PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 386
            S + +RV  +V     V   +VT +A F +DLG DSLDTVE+VMALEEEF  EIPD EA+KI ++  A+D++ +H
Sbjct:    2 STIEERVKKIVVEQLGVKEEEVTTSASFVDDLGADSLDTVELVMALEEEFECEIPDEEAEKITSVQQAIDYVKAH 76          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_XANAC (Acyl carrier protein OS=Xanthomonas axonopodis pv. citri GN=acpP PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIASH 386
            S + +RV  +V     V   +VT +A F +DLG DSLDTVE+VMALEEEF  EIPD EA+KI ++  A+D++ +H
Sbjct:    2 STIEERVKKIVVEQLGVKEEEVTTSASFVDDLGADSLDTVELVMALEEEFECEIPDEEAEKITSVQQAIDYVKAH 76          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_WIGBR (Acyl carrier protein OS=Wigglesworthia glossinidia brevipalpis GN=acpP PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  162 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFI 377
            S + + V S++     V   +VT NA F +DLG DSLDTVE+VMALEEEF  EIPD EA+KI T+  A+DFI
Sbjct:    2 STIEESVKSIIAEQLGVKKEEVTNNASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDFI 73          
BLAST of DN618246 vs. ExPASy Swiss-Prot
Match: ACP_SYNY3 (Acyl carrier protein OS=Synechocystis sp. (strain PCC 6803) GN=acpP PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 3
Query:  165 EVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKINTINMAVDFIAS 383
            E+ ++V  +V    +VDP KVT +A F  DLG DSLDTVE+VMALEEEF  EIPD  A+ I+T+  AV+ I S
Sbjct:    4 EIFEKVKKIVVEQLEVDPDKVTPDATFAEDLGADSLDTVELVMALEEEFDIEIPDEVAETIDTVGKAVEHIES 76          
The following BLAST results are available for this feature:
BLAST of DN618246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
ACPM_DICDI4.464e-1446.34Acyl carrier protein, mitochondrial OS=Dictyosteli... [more]
ACP1_PSEAE4.464e-1451.95Acyl carrier protein 1 OS=Pseudomonas aeruginosa G... [more]
ACP_ZYMMO5.830e-1449.33Acyl carrier protein OS=Zymomonas mobilis GN=acpP ... [more]
ACP_XANCP5.830e-1450.67Acyl carrier protein OS=Xanthomonas campestris pv.... [more]
ACP_XANCB5.830e-1450.67Acyl carrier protein OS=Xanthomonas campestris pv.... [more]
ACP_XANC85.830e-1450.67Acyl carrier protein OS=Xanthomonas campestris pv.... [more]
ACP_XANC55.830e-1450.67Acyl carrier protein OS=Xanthomonas campestris pv.... [more]
ACP_XANAC5.830e-1450.67Acyl carrier protein OS=Xanthomonas axonopodis pv.... [more]
ACP_WIGBR5.830e-1455.56Acyl carrier protein OS=Wigglesworthia glossinidia... [more]
ACP_SYNY35.830e-1454.79Acyl carrier protein OS=Synechocystis sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02E23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618246 ID=DN618246; Name=DN618246; organism=Citrus sinensis; type=EST; length=591bp
GGCAGCAGATACTGAAAATGGCGGCGGCGAGAGGTGCCTTGCTAAAGTAC
CTGAGAGTGAACGTGGCCACCGTGCAACGAAACCCTAGCCCCTTTTCTCT
CTCATTCAACTCCATACGCCGCTGTTTCGCGGAAGAGGTCAGGGGCTCTT
TCCTCGACAAATCTGAAGTCACCGATCGCGTCATTTCCGTCGTTAAAAAC
TTCCAGAAAGTTGATCCTTCCAAGGTTACGGTTAATGCCCATTTCCAGAA
TGATCTTGGGTTGGATAGTTTGGACACTGTGGAGGTCGTGATGGCACTTG
AAGAAGAATTCGGATTCGAGATCCCAGATAATGAGGCAGACAAGATCAAT
ACCATCAATATGGCTGTCGATTTCATTGCTTCTCATCCTCAGGCTAAGTA
GGGGAAACTATGAAGCCCTACGATGCTATTTTCACTCTTTTGATGTTCAG
AATTAGCAGCAGCATTAGAATTCTCTTATCCCGGTACCTAANATTTTTGT
TCCTTAAAAAACGAGTAAACTTTAAAAGCCTTTCTGGTTTTCCGACCCCA
TTTGAACTCTGCTTGAAGAGTATTGTTTTTGGGAGACTTGC
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