DN618239

Overview
NameDN618239
Unique NameDN618239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618239 vs. ExPASy Swiss-Prot
Match: APT_LEPBJ (Adenine phosphoribosyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=apt PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.270e-16
Identity = 39/79 (49.37%), Postives = 60/79 (75.95%), Query Frame = -2
Query:  366 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK---PLFVL 593
            Y LEYGKDV+E+H  AVQ G++ L++DDL+ATGGT+ AA++LL+++G  + E   +I+LP+L G ++L EK   P+F +
Sbjct:   93 YDLEYGKDVIEIHKDAVQPGDKILLMDDLIATGGTMIAAVKLLKKLGAQIYEAGVIIDLPDLGGSKKLQEKLEVPVFAI 171          
BLAST of DN618239 vs. ExPASy Swiss-Prot
Match: APT_RHOS1 (Adenine phosphoribosyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=apt PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.658e-16
Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = -2
Query:  390 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 593
            Y LEYG+ V+E+H  A+QAGE+ L+VDDL+ATGGT  A I+L+E++G  VV CA V++LP+L GR RL
Sbjct:   95 YQLEYGEAVVEVHDDAIQAGEKVLLVDDLLATGGTAEAGIKLIEQLGDQVVGCAFVVDLPDLGGRRRL 162          
BLAST of DN618239 vs. ExPASy Swiss-Prot
Match: APT_AGRT5 (Adenine phosphoribosyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=apt PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.658e-16
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = -2
Query:  390 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 593
            YSLEYG D MEMHV AVQ GE+ ++VDDL+ATGGT   A++LL ++G  +V    VI+LP+L GR++L
Sbjct:   97 YSLEYGVDEMEMHVDAVQPGEKVILVDDLIATGGTAEGAVKLLRQMGAEIVSACFVIDLPDLGGRKKL 164          
BLAST of DN618239 vs. ExPASy Swiss-Prot
Match: APT_RHOS5 (Adenine phosphoribosyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=apt PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.166e-16
Identity = 40/68 (58.82%), Postives = 55/68 (80.88%), Query Frame = -2
Query:  390 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 593
            Y LEYG+ V+++H  A+QAGER L+VDDL+ATGGT  A IRL+E++G  VV CA V++LP+L GR++L
Sbjct:   95 YQLEYGEAVVKVHDDAIQAGERILLVDDLLATGGTAEAGIRLIEQLGGEVVGCAFVVDLPDLGGRKKL 162          
BLAST of DN618239 vs. ExPASy Swiss-Prot
Match: APT_NITMU (Adenine phosphoribosyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=apt PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.166e-16
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = -2
Query:  369 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFV 593
            Y LEYG D +E+HV A+Q G+R L+VDDL+ATGGT  AA  L+  +G  VVEC+ VI+LP++ GR RL ++ L V
Sbjct:   92 YQLEYGSDRIEIHVDAIQKGDRVLLVDDLIATGGTAEAAAGLIHEMGGEVVECSFVIDLPDIGGRARLEDQGLKV 166          
BLAST of DN618239 vs. ExPASy Swiss-Prot
Match: APT_MESSB (Adenine phosphoribosyltransferase OS=Mesorhizobium sp. (strain BNC1) GN=apt PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.829e-16
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = -2
Query:  390 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 593
            YSLEYG D MEMH+ AV  GE+ ++VDDL+ATGGT  AA+RLL ++G  +V    VI+LP+L GR +L
Sbjct:   98 YSLEYGLDEMEMHIDAVSPGEKVILVDDLIATGGTAEAAVRLLRQMGAEIVAACFVIDLPDLGGRAKL 165          
BLAST of DN618239 vs. ExPASy Swiss-Prot
Match: APT_LACLA (Adenine phosphoribosyltransferase OS=Lactococcus lactis subsp. lactis GN=apt PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.829e-16
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = -2
Query:  363 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 593
            Y  EYG D + MH  +++ G+R LIVDDL+ATGGT++A I L+E++G  VV CA +IEL ELKGRE++G+    VL+
Sbjct:   92 YEKEYGTDTLTMHSDSIKPGQRVLIVDDLLATGGTIAATIELVEKMGGIVVGCAFLIELDELKGREKIGDYDYKVLM 168          
BLAST of DN618239 vs. ExPASy Swiss-Prot
Match: APT_BRAJA (Adenine phosphoribosyltransferase OS=Bradyrhizobium japonicum GN=apt PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.829e-16
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = -2
Query:  390 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 593
            YSLEYG D MEMHV A+Q GER ++VDDL+ATGGT   A++LL ++G +VV    +I+LPEL G  +L
Sbjct:   96 YSLEYGIDEMEMHVDAIQPGERVILVDDLIATGGTAEGAVKLLRQIGANVVAACFIIDLPELGGAAKL 163          
BLAST of DN618239 vs. ExPASy Swiss-Prot
Match: APT_BORA1 (Adenine phosphoribosyltransferase OS=Bordetella avium (strain 197N) GN=apt PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.829e-16
Identity = 40/78 (51.28%), Postives = 58/78 (74.36%), Query Frame = -2
Query:  366 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE--KPLFVL 593
            YSLEYG   +E+H  AV+ G+R L+VDDL+ATGGT+ AAI+LL+R+G +VVE A +I+LP + G + + E   PL+ +
Sbjct:   98 YSLEYGNATVEIHTDAVRTGQRVLLVDDLIATGGTMVAAIKLLQRLGANVVEAAAIIDLPYIGGSQHIAETGTPLYTV 175          
BLAST of DN618239 vs. ExPASy Swiss-Prot
Match: APT_ACIAC (Adenine phosphoribosyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=apt PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.829e-16
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = -2
Query:  363 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK--PLFVLV 593
            Y LEYG   +E+H  AV+ G+R L++DDL+ATGGT+ A  RLLER+G  V E A +++LPEL G  RL E   PL+ LV
Sbjct:  101 YELEYGSATVELHADAVKPGDRVLLIDDLIATGGTMMAGRRLLERLGATVTEGAAIVDLPELGGSSRLRESGLPLYTLV 179          
The following BLAST results are available for this feature:
BLAST of DN618239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_LEPBJ1.270e-1649.37Adenine phosphoribosyltransferase OS=Leptospira bo... [more]
APT_RHOS11.658e-1658.82Adenine phosphoribosyltransferase OS=Rhodobacter s... [more]
APT_AGRT51.658e-1657.35Adenine phosphoribosyltransferase OS=Agrobacterium... [more]
APT_RHOS52.166e-1658.82Adenine phosphoribosyltransferase OS=Rhodobacter s... [more]
APT_NITMU2.166e-1654.67Adenine phosphoribosyltransferase OS=Nitrosospira ... [more]
APT_MESSB2.829e-1657.35Adenine phosphoribosyltransferase OS=Mesorhizobium... [more]
APT_LACLA2.829e-1653.25Adenine phosphoribosyltransferase OS=Lactococcus l... [more]
APT_BRAJA2.829e-1657.35Adenine phosphoribosyltransferase OS=Bradyrhizobiu... [more]
APT_BORA12.829e-1651.28Adenine phosphoribosyltransferase OS=Bordetella av... [more]
APT_ACIAC2.829e-1653.16Adenine phosphoribosyltransferase OS=Acidovorax av... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02E19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618239 ID=DN618239; Name=DN618239; organism=Citrus sinensis; type=EST; length=594bp
CCCCCTTTTTTTTTTTTTATAAAGAGACGAGTTGAATTGCGGTTTAATTC
ACACATGATACATCAACAACCATCAGATAGAATCTCCAGATAATTTGAAA
AGCATCAAATACAGCTGTTTACGGGAAGATGGAATTTTTTCATAAGCCTA
TCATTCTTAAACCCAACAATAGCAGACAGAACCCAGCTTCCCCACCACTC
TTTCCCCAACGTCTTAAATAAAATAAAAAGCCAATGAAACTGCTCTTATA
TTACCAGATGGTTTTATGAAGTTCTCAAGCTTTGAGCAGAGCCCGAGCGA
CTAGAAACCCATATGGTCCACAAACATTGCATTTAAACCATAACCTGAGG
TCAAGTTTAGCTTACAAGAACAAATAGTGGTTTCTCTCCCAGCCGTTCCC
GACCCTTTAGCTCTGGCAGTTCAATCACGCATGCACACTCAACCACATGC
ACCCCAACTCGCTCAAGTAGCCTGATTGCAGCAGACAAGGTCCCACCAGT
TGCAACTAGATCGTCTACTATTAAAGCACGCTCCCCTGCTTGTACAGCAC
CTACATGCATCTCCATTACATCTTTTCCATATTCCAAGGAATAC
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