DN618202 | Citrus Genome Database

Overview


Name	DN618202
Unique Name	DN618202
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	451

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.863e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.863e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.863e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.863e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.863e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.863e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.863e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.863e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.863e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.863e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of DN618202 vs. ExPASy Swiss-Prot

BLAST of DN618202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94


Match Name	E-value	Identity	Description
UBIQ_LUPAL	2.863e-36	100.00	Ubiquitin OS=Lupinus albus PE=3 SV=1	[more]
UBIQ_LINUS	2.863e-36	100.00	Ubiquitin OS=Linum usitatissimum PE=3 SV=1	[more]
UBIQ_HORVU	2.863e-36	100.00	Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1	[more]
UBIQ_HELAN	2.863e-36	100.00	Ubiquitin OS=Helianthus annuus PE=3 SV=1	[more]
UBIQ_DESAN	2.863e-36	100.00	Ubiquitin OS=Deschampsia antarctica PE=2 SV=1	[more]
UBIQ_DAUCA	2.863e-36	100.00	Ubiquitin OS=Daucus carota PE=3 SV=1	[more]
UBIQ_BRARA	2.863e-36	100.00	Ubiquitin OS=Brassica rapa PE=3 SV=1	[more]
UBIQ_AVESA	2.863e-36	100.00	Ubiquitin OS=Avena sativa PE=1 SV=1	[more]
UBIQ_AVEFA	2.863e-36	100.00	Ubiquitin OS=Avena fatua PE=3 SV=1	[more]
UBIQ_ASPOF	2.863e-36	100.00	Ubiquitin OS=Asparagus officinalis PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS11_02D24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN618202 ID=DN618202; Name=DN618202; organism=Citrus sinensis; type=EST; length=451bp
CTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTCGCCGACTA
CAATATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTTCGTGGAG
GTATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACCATCACTTTGGAG
GTGGAAAGTTCAGACACCATAGATAATGTGAAGGCCAAGATCCAAGATAA
GGAGGGCATTCCTCCCGACCAGCAGAGGTTGATTTTTGCTGGCAAGCAGC
TTGAAGATGGTAGGACCCTTGCAGATTATAACATTCAGAAGGAGTCCACC
CTTCACTTGGTTCTCCGCCTTCGTGGTGGCATGCAAATTTTTGTGAAGAC
TCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCGGACACTATTG
ATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG
C