DN618202 | Citrus Genome Database

Overview


Name	DN618202
Unique Name	DN618202
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	451

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.863e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 6.379e-36
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.331e-36
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 79.7221 bits (195), Expect = 6.207e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.421e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 80.1073 bits (196), Expect = 4.752e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.421e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 80.1073 bits (196), Expect = 4.752e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.421e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 80.1073 bits (196), Expect = 4.752e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.421e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 80.1073 bits (196), Expect = 4.752e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.421e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 80.1073 bits (196), Expect = 4.752e-15
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.856e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 78.5666 bits (192), Expect = 1.383e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.424e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 79.337 bits (194), Expect = 8.106e-15
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of DN618202 vs. ExPASy Swiss-Prot

BLAST of DN618202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94


Match Name	E-value	Identity	Description
UBIQ_ARATH	2.863e-36	100.00	Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=...	[more]
UBIQ_COPCO	6.379e-36	98.68	Ubiquitin OS=Coprinus congregatus PE=1 SV=1	[more]
UBIQ_CHLRE	8.331e-36	98.68	Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=...	[more]
UBIQ_YEAST	1.421e-35	97.37	Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1...	[more]
UBIQ_SCHPO	1.421e-35	97.37	Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=...	[more]
UBIQ_KLULA	1.421e-35	97.37	Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=...	[more]
UBIQ_CRYNE	1.421e-35	97.37	Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ...	[more]
UBIQ_CANAL	1.421e-35	97.37	Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1	[more]
UBL1_ORYSJ	1.856e-35	97.37	Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja...	[more]
UBIQ_NEUCR	2.424e-35	97.37	Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS11_02D24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN618202 ID=DN618202; Name=DN618202; organism=Citrus sinensis; type=EST; length=451bp
CTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTCGCCGACTA
CAATATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTTCGTGGAG
GTATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACCATCACTTTGGAG
GTGGAAAGTTCAGACACCATAGATAATGTGAAGGCCAAGATCCAAGATAA
GGAGGGCATTCCTCCCGACCAGCAGAGGTTGATTTTTGCTGGCAAGCAGC
TTGAAGATGGTAGGACCCTTGCAGATTATAACATTCAGAAGGAGTCCACC
CTTCACTTGGTTCTCCGCCTTCGTGGTGGCATGCAAATTTTTGTGAAGAC
TCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCGGACACTATTG
ATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG
C