DN618202 | Citrus Genome Database

Overview


Name	DN618202
Unique Name	DN618202
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	451

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.424e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 78.1814 bits (191), Expect = 1.806e-14
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.166e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.166e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.134e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 78.5666 bits (192), Expect = 1.383e-14
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.134e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 78.5666 bits (192), Expect = 1.383e-14
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.400e-35
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.0258 bits (188), Expect = 4.023e-14
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQ 40

HSP 3 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.400e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 78.1814 bits (191), Expect = 1.806e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of DN618202 vs. ExPASy Swiss-Prot

BLAST of DN618202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94


Match Name	E-value	Identity	Description
UBIQ_ACECL	2.424e-35	96.05	Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1	[more]
UBIQ_TRYCR	3.166e-35	97.37	Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1	[more]
UBIQ_ACACA	3.166e-35	97.37	Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1	[more]
UBIQ_GEOCY	4.134e-35	96.05	Ubiquitin OS=Geodia cydonium PE=3 SV=1	[more]
UBIQ_CAEEL	4.134e-35	96.05	Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ...	[more]
UBIQ_EUPEU	5.400e-35	96.05	Ubiquitin OS=Euplotes eurystomus PE=3 SV=1	[more]
UBIQ_AGLNE	5.400e-35	96.05	Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1	[more]
UBIQ_XENLA	7.052e-35	96.05	Ubiquitin OS=Xenopus laevis PE=1 SV=1	[more]
UBIQ_SPOFR	7.052e-35	96.05	Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1	[more]
UBIQ_RAT	7.052e-35	96.05	Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS11_02D24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN618202 ID=DN618202; Name=DN618202; organism=Citrus sinensis; type=EST; length=451bp
CTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTCGCCGACTA
CAATATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTTCGTGGAG
GTATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACCATCACTTTGGAG
GTGGAAAGTTCAGACACCATAGATAATGTGAAGGCCAAGATCCAAGATAA
GGAGGGCATTCCTCCCGACCAGCAGAGGTTGATTTTTGCTGGCAAGCAGC
TTGAAGATGGTAGGACCCTTGCAGATTATAACATTCAGAAGGAGTCCACC
CTTCACTTGGTTCTCCGCCTTCGTGGTGGCATGCAAATTTTTGTGAAGAC
TCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCGGACACTATTG
ATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG
C