DN618202 | Citrus Genome Database

Overview


Name	DN618202
Unique Name	DN618202
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	451

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of DN618202 vs. ExPASy Swiss-Prot

BLAST of DN618202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94


Match Name	E-value	Identity	Description
UBIQ_RABIT	7.052e-35	96.05	Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1	[more]
UBIQ_PONPY	7.052e-35	96.05	Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2	[more]
UBIQ_PLUXY	7.052e-35	96.05	Ubiquitin OS=Plutella xylostella PE=3 SV=1	[more]
UBIQ_PIG	7.052e-35	96.05	Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1	[more]
UBIQ_PANTR	7.052e-35	96.05	Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2	[more]
UBIQ_OPHHA	7.052e-35	96.05	Ubiquitin OS=Ophiophagus hannah PE=3 SV=1	[more]
UBIQ_MOUSE	7.052e-35	96.05	Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1	[more]
UBIQ_MANSE	7.052e-35	96.05	Ubiquitin OS=Manduca sexta PE=3 SV=1	[more]
UBIQ_MACFA	7.052e-35	96.05	Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=...	[more]
UBIQ_ICTPU	7.052e-35	96.05	Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS11_02D24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN618202 ID=DN618202; Name=DN618202; organism=Citrus sinensis; type=EST; length=451bp
CTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTCGCCGACTA
CAATATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTTCGTGGAG
GTATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACCATCACTTTGGAG
GTGGAAAGTTCAGACACCATAGATAATGTGAAGGCCAAGATCCAAGATAA
GGAGGGCATTCCTCCCGACCAGCAGAGGTTGATTTTTGCTGGCAAGCAGC
TTGAAGATGGTAGGACCCTTGCAGATTATAACATTCAGAAGGAGTCCACC
CTTCACTTGGTTCTCCGCCTTCGTGGTGGCATGCAAATTTTTGTGAAGAC
TCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCGGACACTATTG
ATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG
C