DN618202 | Citrus Genome Database

Overview


Name	DN618202
Unique Name	DN618202
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	451

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.052e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 9.211e-35
Identity = 72/76 (94.74%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.411 bits (189), Expect = 3.080e-14
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.203e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76

HSP 2 Score: 77.7962 bits (190), Expect = 2.359e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.1662 bits (165), Expect = 1.869e-11
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.571e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 76.6406 bits (187), Expect = 5.254e-14
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.052e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 76.6406 bits (187), Expect = 5.254e-14
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.5514 bits (166), Expect = 1.431e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.052e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 76.2554 bits (186), Expect = 6.862e-14
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.052e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 76.2554 bits (186), Expect = 6.862e-14
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.052e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 76.2554 bits (186), Expect = 6.862e-14
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DN618202 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.970e-34
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:  103 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 330
            MQIFVKTLTGKTITL+VE SD+IDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 74.7146 bits (182), Expect = 1.997e-13
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1

Query:  331 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 450
            MQIFVKTLTGKTITL+VE SD+IDNVK KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQ 40

HSP 3 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1

Query:    1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 102
            LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   43 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of DN618202 vs. ExPASy Swiss-Prot

BLAST of DN618202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94


Match Name	E-value	Identity	Description
UBIQ_CAMDR	7.052e-35	96.05	Ubiquitin OS=Camelus dromedarius PE=3 SV=2	[more]
UBIQ_BOVIN	7.052e-35	96.05	Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1	[more]
UBIQ_TETPY	9.211e-35	94.74	Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ...	[more]
UBIQ_SHEEP	1.203e-34	94.74	Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2	[more]
UBIQ_EIMBO	1.571e-34	94.74	Ubiquitin OS=Eimeria bovis PE=2 SV=1	[more]
UBIQ_TRYBB	2.052e-34	94.74	Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1	[more]
UBIQ_STRPU	2.052e-34	94.74	Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV...	[more]
UBIQ_ENCCU	2.052e-34	94.74	Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074...	[more]
UBIQ_DICDI	2.052e-34	94.74	Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1...	[more]
UBIQ_PHYIN	5.970e-34	93.42	Ubiquitin OS=Phytophthora infestans PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS11_02D24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN618202 ID=DN618202; Name=DN618202; organism=Citrus sinensis; type=EST; length=451bp
CTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTCGCCGACTA
CAATATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTTCGTGGAG
GTATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACCATCACTTTGGAG
GTGGAAAGTTCAGACACCATAGATAATGTGAAGGCCAAGATCCAAGATAA
GGAGGGCATTCCTCCCGACCAGCAGAGGTTGATTTTTGCTGGCAAGCAGC
TTGAAGATGGTAGGACCCTTGCAGATTATAACATTCAGAAGGAGTCCACC
CTTCACTTGGTTCTCCGCCTTCGTGGTGGCATGCAAATTTTTGTGAAGAC
TCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCGGACACTATTG
ATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG
C