DN618197

Overview
NameDN618197
Unique NameDN618197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618197 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.813e-25
Identity = 66/137 (48.18%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  187 VGGVVTNWALVSMNHDTQSCMDPNVMEAK---------------IVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREI--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 546
            V GVVTNW LV+  H TQ CMDPNV+E                 +++S+ GHDGPFGA   KR+  I     + GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  186 VAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of DN618197 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.083e-19
Identity = 52/124 (41.94%), Postives = 77/124 (62.10%), Query Frame = -2
Query:  178 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG 549
            RV GVV NW+ V       +C+DP  + A+ VV + GHD    A   ++L   GM+++   +  + +  +ED +V  T E+ PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  139 RVAGVVVNWSPVQGLPRQITCVDPVGLRAEYVVDATGHD----AVVTRKLAERGMVEASK-LGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of DN618197 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 54/124 (43.55%), Postives = 70/124 (56.45%), Query Frame = -2
Query:  178 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG 549
            RV G+V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+I+ +PG  A+     E   V  T+E+ PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  135 RVSGIVINWTPVKM---TGLHVDPLTVEAKYVIDSTGH----GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of DN618197 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.097e-19
Identity = 55/126 (43.65%), Postives = 72/126 (57.14%), Query Frame = -2
Query:  175 GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 552
            GRV G+V NW  V M   T   +DP  +EAK VV S GH    GA   + L   G+I ++PG   +     E+  V  TRE+ PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:  133 GRVSGLVINWTPVMM---TGLHVDPLTVEAKFVVDSTGH----GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
BLAST of DN618197 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.552e-18
Identity = 53/148 (35.81%), Postives = 80/148 (54.05%), Query Frame = -2
Query:  175 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHD----------GPFGATGVKRLK--SIGMIDSV-----------PGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 549
            RVGG+V NW  V       +C+DP  +E+ +VV S GHD          G   A G++     + GM ++            PG  ++ ++ +ED +V  T  + PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  145 RVGGIVLNWTPVHALPRELTCVDPVAVESDLVVDSTGHDAVVISKLSERGVLNAPGIEHANEHNTGMDNTADDEYGAPGHDSPGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of DN618197 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.457e-18
Identity = 55/123 (44.72%), Postives = 69/123 (56.10%), Query Frame = -2
Query:  181 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 549
            RV G+V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+I+ +PG  A+     E   V  TRE+ PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  135 RVSGIVINWTPVLM---TGLHVDPLTVEAKYVIDSTGH----GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of DN618197 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 54/123 (43.90%), Postives = 67/123 (54.47%), Query Frame = -2
Query:  181 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 549
            RV G+V NW  V M       +DP  +EAK V+ S GH        VKR    G++  +PG  A+     E   V+ TRE+ PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  135 RVSGIVINWTPVLM---AGLHVDPLTIEAKYVIDSTGHGAQVAQFLVKR----GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of DN618197 vs. ExPASy Swiss-Prot
Match: THI4_HALMA (Putative thiazole biosynthetic enzyme OS=Haloarcula marismortui GN=rrnAC1782 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 56/147 (38.10%), Postives = 76/147 (51.70%), Query Frame = -2
Query:  181 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMI------DSVPGMKALDMNT------------------AEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 549
            RVGG+V NW  V       +C+DP  +EA +V+ + GHD    A  VK+L   G++      D   GM   D +T                  +EDA+V  T     G++VTGM  A   G PRMGPTFGAM++SG++AA +AL  L
Sbjct:  149 RVGGIVMNWTPVHALPREITCVDPIAVEADLVIDATGHD----AMAVKKLDERGVLNAPGLEDEASGMDQTDDDTYGAPGHDSPGHDSMWVGESEDAVVEHTGLAHDGLVVTGMATATTYGLPRMGPTFGAMLVSGKRAAQVALDEL 291          
BLAST of DN618197 vs. ExPASy Swiss-Prot
Match: THI4_NATPD (Putative thiazole biosynthetic enzyme OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP5174A PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17
Identity = 54/151 (35.76%), Postives = 77/151 (50.99%), Query Frame = -2
Query:  178 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSV---------------------------PGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG 549
            RVGG+V NW  V       +C+DP  +EA +V+ + GHD    A  V +L+  G++++                            PG  ++ +  +EDA+V  T     G+IVTGM  A   G PRMGPTFGAM++SG++AA  AL  LG
Sbjct:  146 RVGGIVMNWTPVHALPREITCVDPIAVEADLVIDATGHD----AVAVSKLQERGVLNAPGIEHADEHNTGMDQTGDDSYGAPGHDSPGHDSMWVGQSEDAVVEHTGLAHEGLIVTGMATATTYGLPRMGPTFGAMLLSGKRAAQAALDELG 292          
BLAST of DN618197 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 44/125 (35.20%), Postives = 69/125 (55.20%), Query Frame = -2
Query:  175 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 549
            RV G++  W  + M+      +DP    AK V+ + GHD    +   +++  +G+   +PG K+     +E  +V  T ++ PG+ VTGM VA + G PRMGP FG MM+SG+K A +  K L +
Sbjct:  135 RVAGLLWIWTPIQMSG---MHVDPLYTMAKAVIDATGHDAEVISVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
The following BLAST results are available for this feature:
BLAST of DN618197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
THI4_YEAST3.813e-2548.18Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_AERPE4.083e-1941.94Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_PYRFU6.965e-1943.55Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO9.097e-1943.65Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_HALWD1.552e-1835.81Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_PYRAB3.457e-1844.72Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRHO4.515e-1843.90Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_HALMA2.926e-1738.10Putative thiazole biosynthetic enzyme OS=Haloarcul... [more]
THI4_NATPD6.519e-1735.76Putative thiazole biosynthetic enzyme OS=Natronomo... [more]
THI4_PYRAR9.413e-1635.20Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02D22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618197 ID=DN618197; Name=DN618197; organism=Citrus sinensis; type=EST; length=556bp
TTTTTTTTTTTTTTTTTGGGTTTATTGTTGATTTTGAATTCTCATCAAAA
TGTACATAATTCTCAGATTTTATAATTTTTAAGCATCAACAATCTCGCTG
TTCTCAGTGGCCGCAAGGACAAACTCTGGCTGTACTTCCGTAACTTCACT
GAATGTCCCATCTATCGCATTCGGCTGCCCCAATGCCTTCAACGCCAAAT
GGGCTGCCTTCTGCCCTGAAATCATCATGGCCCCGAATGTAGGTCCCATT
CTAGGGGCACCGTCGATCTCTGCGACTTCCATGCCCGTGACAATCATGCC
AGGCACGATCTCCCTGGTAAGCCTAACGATAGCATCCTCTGCAGTGTTCA
TATCGAGAGCTTTCATTCCGGGGACGGAGTCAATCATGCCAATACTCTTA
AGCCTCTTAACACCGGTAGCCCCAAAAGGGCCGTCATGGCCACACGAGCT
GACCACAATCTTGGCCTCCATCACATTGGGGTCCATGCAAGACTGTGTGT
CGTGATTCATAGACACCAAGGCCCAGTTTGTGACGACGCCACCTACTCTC
CCTCCC
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