DN618194 | Citrus Genome Database

Overview


Name	DN618194
Unique Name	DN618194
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	343

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_METRJ (60 kDa chaperonin OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=groL PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.717e-36
Identity = 71/112 (63.39%), Postives = 92/112 (82.14%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            +STS+E+AQVGTISANG++EIGE+IA AM+KVG EGVIT+ + KT   EL+VVEGM+ DRGY+SPYFITN +    ELEDP IL+HEKK+S+L A++ VLE  ++  +PLLI
Sbjct:  138 VSTSDEVAQVGTISANGDKEIGEMIAHAMQKVGNEGVITVEEAKTAETELDVVEGMQFDRGYLSPYFITNAEKMVAELEDPYILIHEKKLSSLQAMLPVLEAVVQTGKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: HSP60_SCHPO (Heat shock protein 60, mitochondrial OS=Schizosaccharomyces pombe GN=hsp60 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.139e-35
Identity = 73/112 (65.18%), Postives = 95/112 (84.82%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEEI+QV TISANG+  IGEL+AKAME+VGKEGVIT+ +G+T+ +ELEV EGMK DRGYISPYFIT+ K+QK E E+PLIL+ EKK+S +  ++  LELA +++RPL+I
Sbjct:  169 ITTSEEISQVATISANGDTHIGELLAKAMERVGKEGVITVKEGRTISDELEVTEGMKFDRGYISPYFITDVKSQKVEFENPLILLSEKKVSAVQDILPSLELAAQQRRPLVI 280

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH605_RHIME (60 kDa chaperonin 5 OS=Rhizobium meliloti GN=groL5 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.487e-35
Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            IS + EIAQVGTISANG+ EIG  +A+AMEKVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYFITNQ   + ELEDP IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 ISKNSEIAQVGTISANGDTEIGRYLAEAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFITNQDKMRVELEDPYILIHEKKLSNLQAMLPVLEAVVQSGKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BRUSU (60 kDa chaperonin OS=Brucella suis GN=groL PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.313e-35
Identity = 71/112 (63.39%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEE+AQVGTISANGE EIG++IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 INTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQALLPVLEAVVQTSKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BRUSI (60 kDa chaperonin OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=groL PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.313e-35
Identity = 71/112 (63.39%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEE+AQVGTISANGE EIG++IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 INTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQALLPVLEAVVQTSKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BRUO2 (60 kDa chaperonin OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=groL PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.313e-35
Identity = 71/112 (63.39%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEE+AQVGTISANGE EIG++IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 INTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQALLPVLEAVVQTSKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BRUME (60 kDa chaperonin OS=Brucella melitensis GN=groL PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.313e-35
Identity = 71/112 (63.39%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEE+AQVGTISANGE EIG++IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 INTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQALLPVLEAVVQTSKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BRUMB (60 kDa chaperonin OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=groL PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.313e-35
Identity = 71/112 (63.39%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEE+AQVGTISANGE EIG++IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 INTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQALLPVLEAVVQTSKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BRUC2 (60 kDa chaperonin OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=groL PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.313e-35
Identity = 71/112 (63.39%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEE+AQVGTISANGE EIG++IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 INTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQALLPVLEAVVQTSKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BRUAB (60 kDa chaperonin OS=Brucella abortus GN=groL PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.313e-35
Identity = 71/112 (63.39%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEE+AQVGTISANGE EIG++IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 INTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQALLPVLEAVVQTSKPLLI 249

The following BLAST results are available for this feature:

BLAST of DN618194 vs. ExPASy Swiss-Prot

BLAST of DN618194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH60_METRJ	8.717e-36	63.39	60 kDa chaperonin OS=Methylobacterium radiotoleran...	[more]
HSP60_SCHPO	1.139e-35	65.18	Heat shock protein 60, mitochondrial OS=Schizosacc...	[more]
CH605_RHIME	1.487e-35	65.18	60 kDa chaperonin 5 OS=Rhizobium meliloti GN=groL5...	[more]
CH60_BRUSU	3.313e-35	63.39	60 kDa chaperonin OS=Brucella suis GN=groL PE=3 SV...	[more]
CH60_BRUSI	3.313e-35	63.39	60 kDa chaperonin OS=Brucella suis (strain ATCC 23...	[more]
CH60_BRUO2	3.313e-35	63.39	60 kDa chaperonin OS=Brucella ovis (strain ATCC 25...	[more]
CH60_BRUME	3.313e-35	63.39	60 kDa chaperonin OS=Brucella melitensis GN=groL P...	[more]
CH60_BRUMB	3.313e-35	63.39	60 kDa chaperonin OS=Brucella melitensis biotype 2...	[more]
CH60_BRUC2	3.313e-35	63.39	60 kDa chaperonin OS=Brucella canis (strain ATCC 2...	[more]
CH60_BRUAB	3.313e-35	63.39	60 kDa chaperonin OS=Brucella abortus GN=groL PE=3...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS11_02D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D20, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN618194 ID=DN618194; Name=DN618194; organism=Citrus sinensis; type=EST; length=343bp
GAATGATCAGCACATCTGAGGAGATAGCACAGGTGGGGACAATATCAGCA
AATGGAGAGAGAGAAATTGGCGAGTTAATTGCAAAGGCCATGGAGAAGGT
CGGCAAAGAAGGAGTAATCACCATACACGATGGGAAGACATTATATAATG
AGTTGGAAGTTGTTGAAGGAATGAAGCTTGACAGGGGTTATATATCTCCT
TATTTCATAACCAACCAGAAAAATCAAAAATGTGAATTAGAAGATCCTCT
CATTCTTGTCCACGAGAAGAAAATCTCAAATCTAACTGCTGTTGTGAGGG
TATTAGAGCTGGCATTGAAGAGACAAAGGCCCTTATTGATTGT