DN618194

Overview
NameDN618194
Unique NameDN618194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BRUA2 (60 kDa chaperonin OS=Brucella abortus (strain 2308) GN=groL PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.313e-35
Identity = 71/112 (63.39%), Postives = 91/112 (81.25%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEE+AQVGTISANGE EIG++IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 INTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQALLPVLEAVVQTSKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BRUA1 (60 kDa chaperonin OS=Brucella abortus (strain S19) GN=groL PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.313e-35
Identity = 71/112 (63.39%), Postives = 91/112 (81.25%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEE+AQVGTISANGE EIG++IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 INTSEEVAQVGTISANGEAEIGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQALLPVLEAVVQTSKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH602_RHIEC (60 kDa chaperonin 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL2 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.313e-35
Identity = 71/112 (63.39%), Postives = 89/112 (79.46%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            IS + EIAQVGTISANG+ EIG  +A+AMEKVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TNQ   + ELEDP IL+HEKK+SNL +++ VLE  ++  +PLLI
Sbjct:  138 ISNNSEIAQVGTISANGDAEIGRYLAEAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNQDKMRVELEDPYILIHEKKLSNLQSMLPVLEAVVQSGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH603_SINMW (60 kDa chaperonin 3 OS=Sinorhizobium medicae (strain WSM419) GN=groL3 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.326e-35
Identity = 71/112 (63.39%), Postives = 89/112 (79.46%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            IS + EIAQVGTISANG+ EIG  +A+AMEKVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TNQ   + ELEDP IL+HEKK+SNL +++ VLE  ++  +PLLI
Sbjct:  138 ISQNSEIAQVGTISANGDTEIGRYLAEAMEKVGNEGVITVEEAKTSDTELEVVEGMQFDRGYLSPYFVTNQDKMRVELEDPYILIHEKKLSNLQSILPVLEAVVQSGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH602_ERYLH (60 kDa chaperonin 2 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.650e-35
Identity = 73/112 (65.18%), Postives = 90/112 (80.36%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++ SEEIAQVG ISANG+RE+GE IA+AMEKVGKEGVIT+ + K L  ELE VEGM+ DRGY+SPYFITN      ELE+P IL+HEKK+SNL A++ +LE A++  RPLLI
Sbjct:  138 VAGSEEIAQVGIISANGDREVGEKIAEAMEKVGKEGVITVDESKGLEFELETVEGMQFDRGYLSPYFITNPDKMTVELENPYILIHEKKLSNLQAMLPILEAAVQSGRPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH602_RHILO (60 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.638e-35
Identity = 68/112 (60.71%), Postives = 90/112 (80.36%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++ ++EIAQVGTISANG+ EIG  +A+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYFITNQ   + ELE+P +L+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 VTRNDEIAQVGTISANGDAEIGRFLAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFITNQDKMRVELEEPYVLIHEKKLSNLQALLPVLEAVVQSSKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_OCHA4 (60 kDa chaperonin OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=groL PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.259e-34
Identity = 70/112 (62.50%), Postives = 90/112 (80.36%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEE+AQVGTISANGE EIG++IA AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +LED  IL+HEKK+SNL A++ VLE  ++  +PL+I
Sbjct:  138 INTSEEVAQVGTISANGEAEIGKMIADAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQALLPVLEAVVQTSKPLVI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_METPB (60 kDa chaperonin OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=groL PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.259e-34
Identity = 68/112 (60.71%), Postives = 91/112 (81.25%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            +++SEE+AQVGTISANG++EIGE+IA AM+KVG EGVIT+ + KT   EL+VVEGM+ DRGY+SPYF+TN +    ELEDP IL+HEKK+S+L  ++ VLE  ++  +PLLI
Sbjct:  138 VASSEEVAQVGTISANGDKEIGEMIAHAMQKVGNEGVITVEEAKTAETELDVVEGMQFDRGYLSPYFVTNAEKMVAELEDPYILIHEKKLSSLQPMLPVLEAVVQTGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_CHLPD (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain DSM 266) GN=groL PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.259e-34
Identity = 70/112 (62.50%), Postives = 92/112 (82.14%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            IS  +EIAQVGTISAN + EIGELIA+AM+KVGK+GVIT+ + K +  EL+VVEGM+ DRGY+SPYF+TN +N + ELEDPLIL+H+KKISN+  ++ +LE + +  RPLLI
Sbjct:  138 ISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNPENMEAELEDPLILIHDKKISNMKELLPILEKSAQSGRPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH602_ECOK1 (60 kDa chaperonin 2 OS=Escherichia coli O1:K1 / APEC GN=groL2 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.259e-34
Identity = 71/111 (63.96%), Postives = 91/111 (81.98%), Query Frame = 3
Query:    9 STSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            STS+EIAQVG+ISAN + +IGELIAKAM+KVGKEGVIT+ +G  L NEL+VVEGM+ DRGY+SPYFI N ++ + ELEDP IL+H+KKISN+  ++ +LE   K  +PLLI
Sbjct:  139 STSKEIAQVGSISANSDTDIGELIAKAMDKVGKEGVITVEEGSGLENELDVVEGMQFDRGYLSPYFINNPQSMQAELEDPFILLHDKKISNVRDLLPILEGVAKAGKPLLI 249          
The following BLAST results are available for this feature:
BLAST of DN618194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BRUA23.313e-3563.3960 kDa chaperonin OS=Brucella abortus (strain 2308... [more]
CH60_BRUA13.313e-3563.3960 kDa chaperonin OS=Brucella abortus (strain S19)... [more]
CH602_RHIEC3.313e-3563.3960 kDa chaperonin 2 OS=Rhizobium etli (strain CFN ... [more]
CH603_SINMW4.326e-3563.3960 kDa chaperonin 3 OS=Sinorhizobium medicae (stra... [more]
CH602_ERYLH5.650e-3565.1860 kDa chaperonin 2 OS=Erythrobacter litoralis (st... [more]
CH602_RHILO9.638e-3560.7160 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=... [more]
CH60_OCHA41.259e-3462.5060 kDa chaperonin OS=Ochrobactrum anthropi (strain... [more]
CH60_METPB1.259e-3460.7160 kDa chaperonin OS=Methylobacterium populi (stra... [more]
CH60_CHLPD1.259e-3462.5060 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH602_ECOK11.259e-3463.9660 kDa chaperonin 2 OS=Escherichia coli O1:K1 / AP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618194 ID=DN618194; Name=DN618194; organism=Citrus sinensis; type=EST; length=343bp
GAATGATCAGCACATCTGAGGAGATAGCACAGGTGGGGACAATATCAGCA
AATGGAGAGAGAGAAATTGGCGAGTTAATTGCAAAGGCCATGGAGAAGGT
CGGCAAAGAAGGAGTAATCACCATACACGATGGGAAGACATTATATAATG
AGTTGGAAGTTGTTGAAGGAATGAAGCTTGACAGGGGTTATATATCTCCT
TATTTCATAACCAACCAGAAAAATCAAAAATGTGAATTAGAAGATCCTCT
CATTCTTGTCCACGAGAAGAAAATCTCAAATCTAACTGCTGTTGTGAGGG
TATTAGAGCTGGCATTGAAGAGACAAAGGCCCTTATTGATTGT
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