DN618194 | Citrus Genome Database

Overview


Name	DN618194
Unique Name	DN618194
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	343

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_HUMAN (60 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPD1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.644e-34
Identity = 67/112 (59.82%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++T EEIAQV TISANG++EIG +I+ AM+KVG++GVIT+ DGKTL +ELE++EGMK DRGYISPYFI   K QKCE +D  +L+ EKKIS++ ++V  LE+A   ++PL+I
Sbjct:  162 VTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSIQSIVPALEIANAHRKPLVI 273

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_CHICK (60 kDa heat shock protein, mitochondrial OS=Gallus gallus GN=HSPD1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.644e-34
Identity = 67/112 (59.82%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++T EEIAQV TISANG++EIG +I+ AM+KVG++GVIT+ DGKTL +ELE++EGMK DRGYISPYFI   K QKCE +D  +L+ EKKIS++ ++V  LE+A   ++PL+I
Sbjct:  162 VTTPEEIAQVATISANGDQEIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTAKGQKCEFQDAYVLISEKKISSVQSIVPALEIANSHRKPLVI 273

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_PONAB (60 kDa heat shock protein, mitochondrial OS=Pongo abelii GN=HSPD1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.147e-34
Identity = 67/112 (59.82%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++T EEIAQV TISANG++EIG +I+ AM+KVG++GVIT+ DGKTL +ELE++EGMK DRGYISPYFI   K QKCE +D  +L+ EKKIS++ ++V  LE+A   ++PL+I
Sbjct:  162 VTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVI 273

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BOVIN (60 kDa heat shock protein, mitochondrial OS=Bos taurus GN=HSPD1 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.147e-34
Identity = 67/112 (59.82%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++T EEIAQV TISANG++EIG +I+ AM+KVG++GVIT+ DGKTL +ELE++EGMK DRGYISPYFI   K QKCE +D  +L+ EKKIS++ ++V  LE+A   ++PL+I
Sbjct:  162 VTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVI 273

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BART1 (60 kDa chaperonin OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=groL PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.662e-34
Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I TS EIAQVGTISANG  EIG++IA AMEKVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +L+DP IL+HEKK+SNL +++ VLE  ++  +PLLI
Sbjct:  138 IQTSAEIAQVGTISANGAAEIGKMIADAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNAEKMVADLDDPYILIHEKKLSNLQSLLPVLEAVVQSGKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BARHE (60 kDa chaperonin OS=Bartonella henselae GN=groL PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.662e-34
Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I TS EIAQVGTISANG  EIG++IA AMEKVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +L+DP IL+HEKK+SNL +++ VLE  ++  +PLLI
Sbjct:  138 IQTSAEIAQVGTISANGAAEIGKMIADAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNAEKMVADLDDPYILIHEKKLSNLQSLLPVLEAVVQSGKPLLI 249

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: HSP60_YEAST (Heat shock protein 60, mitochondrial OS=Saccharomyces cerevisiae GN=HSP60 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.783e-34
Identity = 70/112 (62.50%), Postives = 92/112 (82.14%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEEIAQV TISANG+  +G+L+A AMEKVGKEGVITI +G+TL +ELEV EGM+ DRG+ISPYFIT+ K+ K E E PL+L+ EKKIS++  ++  LE++ + +RPLLI
Sbjct:  159 ITTSEEIAQVATISANGDSHVGKLLASAMEKVGKEGVITIREGRTLEDELEVTEGMRFDRGFISPYFITDPKSSKVEFEKPLLLLSEKKISSIQDILPALEISNQSRRPLLI 270

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_RAT (60 kDa heat shock protein, mitochondrial OS=Rattus norvegicus GN=Hspd1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.783e-34
Identity = 66/112 (58.93%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++T EEIAQV TISANG+++IG +I+ AM+KVG++GVIT+ DGKTL +ELE++EGMK DRGYISPYFI   K QKCE +D  +L+ EKKIS++ ++V  LE+A   ++PL+I
Sbjct:  162 VTTPEEIAQVATISANGDKDIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVI 273

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_MOUSE (60 kDa heat shock protein, mitochondrial OS=Mus musculus GN=Hspd1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.783e-34
Identity = 66/112 (58.93%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++T EEIAQV TISANG+++IG +I+ AM+KVG++GVIT+ DGKTL +ELE++EGMK DRGYISPYFI   K QKCE +D  +L+ EKKIS++ ++V  LE+A   ++PL+I
Sbjct:  162 VTTPEEIAQVATISANGDKDIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVI 273

[Close]

BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_CRIGR (60 kDa heat shock protein, mitochondrial OS=Cricetulus griseus GN=HSPD1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.783e-34
Identity = 66/112 (58.93%), Postives = 91/112 (81.25%), Query Frame = 3

Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++T EEIAQV TISANG+++IG +I+ AM+KVG++GVIT+ DGKTL +ELE++EGMK DRGYISPYFI   K QKCE +D  +L+ EKKIS++ ++V  LE+A   ++PL+I
Sbjct:  162 VTTPEEIAQVATISANGDKDIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVI 273

The following BLAST results are available for this feature:

BLAST of DN618194 vs. ExPASy Swiss-Prot

BLAST of DN618194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH60_HUMAN	1.644e-34	59.82	60 kDa heat shock protein, mitochondrial OS=Homo s...	[more]
CH60_CHICK	1.644e-34	59.82	60 kDa heat shock protein, mitochondrial OS=Gallus...	[more]
CH60_PONAB	2.147e-34	59.82	60 kDa heat shock protein, mitochondrial OS=Pongo ...	[more]
CH60_BOVIN	2.147e-34	59.82	60 kDa heat shock protein, mitochondrial OS=Bos ta...	[more]
CH60_BART1	3.662e-34	62.50	60 kDa chaperonin OS=Bartonella tribocorum (strain...	[more]
CH60_BARHE	3.662e-34	62.50	60 kDa chaperonin OS=Bartonella henselae GN=groL P...	[more]
HSP60_YEAST	4.783e-34	62.50	Heat shock protein 60, mitochondrial OS=Saccharomy...	[more]
CH60_RAT	4.783e-34	58.93	60 kDa heat shock protein, mitochondrial OS=Rattus...	[more]
CH60_MOUSE	4.783e-34	58.93	60 kDa heat shock protein, mitochondrial OS=Mus mu...	[more]
CH60_CRIGR	4.783e-34	58.93	60 kDa heat shock protein, mitochondrial OS=Cricet...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS11_02D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D20, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN618194 ID=DN618194; Name=DN618194; organism=Citrus sinensis; type=EST; length=343bp
GAATGATCAGCACATCTGAGGAGATAGCACAGGTGGGGACAATATCAGCA
AATGGAGAGAGAGAAATTGGCGAGTTAATTGCAAAGGCCATGGAGAAGGT
CGGCAAAGAAGGAGTAATCACCATACACGATGGGAAGACATTATATAATG
AGTTGGAAGTTGTTGAAGGAATGAAGCTTGACAGGGGTTATATATCTCCT
TATTTCATAACCAACCAGAAAAATCAAAAATGTGAATTAGAAGATCCTCT
CATTCTTGTCCACGAGAAGAAAATCTCAAATCTAACTGCTGTTGTGAGGG
TATTAGAGCTGGCATTGAAGAGACAAAGGCCCTTATTGATTGT