DN618194

Overview
NameDN618194
Unique NameDN618194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BORA1 (60 kDa chaperonin OS=Bordetella avium (strain 197N) GN=groL PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.783e-34
Identity = 68/112 (60.71%), Postives = 90/112 (80.36%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++TS+EIAQVG+ISAN +  IG++IA AM+KVGKEGVIT+ DGK+L NEL+VVEGM+ DRGY+SPYFI N + Q   L+DP +L+++KKISN+  ++ VLE   K  RPLLI
Sbjct:  138 VTTSKEIAQVGSISANSDSSIGQIIADAMDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINNPEKQVAALDDPFVLIYDKKISNIRDLLPVLEQVAKSSRPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BARBK (60 kDa chaperonin OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=groL PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.783e-34
Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I TSEEIAQV TISANG  +IG++IA AMEKVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +L+DP IL+HEKK+SNL +++ VLE  ++  +PLLI
Sbjct:  138 IQTSEEIAQVATISANGAEDIGKMIADAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNSEKMMVDLDDPYILIHEKKLSNLQSLLPVLEAVVQSGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH602_RHISN (60 kDa chaperonin 2 OS=Rhizobium sp. (strain NGR234) GN=groL2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.783e-34
Identity = 67/112 (59.82%), Postives = 89/112 (79.46%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++ ++EIAQVGTISANG+ EIG  +A+AMEKVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN    + ELE+P +L+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 VTKNDEIAQVGTISANGDTEIGRFLAEAMEKVGNEGVITVEEAKTAVTELEVVEGMQFDRGYLSPYFVTNPDKMRVELEEPYVLIHEKKLSNLQALLPVLESVVQSGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH602_RHILE (60 kDa chaperonin 2 OS=Rhizobium leguminosarum GN=groL2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.783e-34
Identity = 68/112 (60.71%), Postives = 87/112 (77.68%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            IS + EIAQVGTISANG+ EIG  +A+AMEKVG +GVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN    + E EDP IL+HEKK+SNL +++ VLE  ++  +PLLI
Sbjct:  138 ISNNSEIAQVGTISANGDAEIGRFLAEAMEKVGNDGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMRVEFEDPYILIHEKKLSNLQSMLPVLEAVVQSSKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_METSB (60 kDa chaperonin OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=groL PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.247e-34
Identity = 67/112 (59.82%), Postives = 92/112 (82.14%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++++EEIAQVGTISANG++ +GE+I+ AM+KVG EGVIT+ + K+L  EL+VVEGM+ DRGY+SPYFITN +    ELEDP ILVHEKK+S+L A++ VLE  ++  +PL+I
Sbjct:  138 VTSNEEIAQVGTISANGDKSVGEMISTAMQKVGNEGVITVEEAKSLETELDVVEGMQFDRGYLSPYFITNAEKMIAELEDPFILVHEKKLSSLQALLPVLEAVVQSGKPLVI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BARQU (60 kDa chaperonin OS=Bartonella quintana GN=groL PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.247e-34
Identity = 70/112 (62.50%), Postives = 87/112 (77.68%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I TS EIAQVGTISANG  EIG++IA AMEKVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN      +L+DP IL+HEKK+SNL +++ VLE  ++  +PLLI
Sbjct:  138 IQTSAEIAQVGTISANGAAEIGKMIADAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMVADLDDPYILIHEKKLSNLQSLLPVLEAVVQSGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH604_RHILO (60 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.247e-34
Identity = 68/112 (60.71%), Postives = 88/112 (78.57%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I TSEE+AQVGTISANG+  +G++IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN      +LED  IL+HEKK+SNL A++ VLE  ++  +PLLI
Sbjct:  138 IKTSEEVAQVGTISANGDESVGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMVADLEDAYILLHEKKLSNLQAMLPVLEAVVQTSKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BARBA (60 kDa chaperonin OS=Bartonella bacilliformis GN=groL PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 8.159e-34
Identity = 69/112 (61.61%), Postives = 87/112 (77.68%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I TSEEIAQV TISANG  +IG++IA AMEKVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYF+TN +    +L+DP IL+HEKK+SNL +++ VLE   +  +PLLI
Sbjct:  138 IQTSEEIAQVATISANGAEDIGKMIADAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNSEKMMVDLDDPYILIHEKKLSNLQSLLPVLEAVAQSGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH602_CHRVO (60 kDa chaperonin 2 OS=Chromobacterium violaceum GN=groL2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.159e-34
Identity = 71/111 (63.96%), Postives = 89/111 (80.18%), Query Frame = 3
Query:    9 STSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            +TS+EIAQVG+ISAN + +IGE+IA AMEKVGKEGVIT+ DGK+L NEL+VVEGM+ DRGY+SPYFI NQ  Q   L++P IL+ +KKISN+  ++ VLE   K  RPLLI
Sbjct:  139 ATSKEIAQVGSISANSDSDIGEIIANAMEKVGKEGVITVEDGKSLNNELDVVEGMQFDRGYLSPYFINNQDKQIAALDNPFILLFDKKISNIRDLLPVLEQVAKSGRPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH602_BURXL (60 kDa chaperonin 2 OS=Burkholderia xenovorans (strain LB400) GN=groL2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.159e-34
Identity = 71/112 (63.39%), Postives = 88/112 (78.57%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I TS EIAQVG ISAN +  IG++IA AM+KVGKEGVIT+ DGK+L NELEVVEGM+ DRGY+SPYFI +   Q   L+DPLIL+H+KKIS++  ++ VLE A K  +PLLI
Sbjct:  138 IKTSREIAQVGAISANADEAIGKIIADAMDKVGKEGVITVEDGKSLENELEVVEGMQFDRGYLSPYFINDPDKQVAHLDDPLILLHDKKISSIRDLLPVLEAAAKAGKPLLI 249          
The following BLAST results are available for this feature:
BLAST of DN618194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BORA14.783e-3460.7160 kDa chaperonin OS=Bordetella avium (strain 197N... [more]
CH60_BARBK4.783e-3461.6160 kDa chaperonin OS=Bartonella bacilliformis (str... [more]
CH602_RHISN4.783e-3459.8260 kDa chaperonin 2 OS=Rhizobium sp. (strain NGR23... [more]
CH602_RHILE4.783e-3460.7160 kDa chaperonin 2 OS=Rhizobium leguminosarum GN=... [more]
CH60_METSB6.247e-3459.8260 kDa chaperonin OS=Methylocella silvestris (stra... [more]
CH60_BARQU6.247e-3462.5060 kDa chaperonin OS=Bartonella quintana GN=groL P... [more]
CH604_RHILO6.247e-3460.7160 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=... [more]
CH60_BARBA8.159e-3461.6160 kDa chaperonin OS=Bartonella bacilliformis GN=g... [more]
CH602_CHRVO8.159e-3463.9660 kDa chaperonin 2 OS=Chromobacterium violaceum G... [more]
CH602_BURXL8.159e-3463.3960 kDa chaperonin 2 OS=Burkholderia xenovorans (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618194 ID=DN618194; Name=DN618194; organism=Citrus sinensis; type=EST; length=343bp
GAATGATCAGCACATCTGAGGAGATAGCACAGGTGGGGACAATATCAGCA
AATGGAGAGAGAGAAATTGGCGAGTTAATTGCAAAGGCCATGGAGAAGGT
CGGCAAAGAAGGAGTAATCACCATACACGATGGGAAGACATTATATAATG
AGTTGGAAGTTGTTGAAGGAATGAAGCTTGACAGGGGTTATATATCTCCT
TATTTCATAACCAACCAGAAAAATCAAAAATGTGAATTAGAAGATCCTCT
CATTCTTGTCCACGAGAAGAAAATCTCAAATCTAACTGCTGTTGTGAGGG
TATTAGAGCTGGCATTGAAGAGACAAAGGCCCTTATTGATTGT
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