DN618194

Overview
NameDN618194
Unique NameDN618194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_MARMS (60 kDa chaperonin OS=Marinomonas sp. (strain MWYL1) GN=groL PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.032e-28
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 3
Query:   24 IAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I QVGTISAN +  +G +IA+AME+VGKEGVIT+ +G    +EL VVEGM+ DRGY+SPYFI NQ+    ELE+P IL+ +KKISN+  ++ VLE   K  RPLLI
Sbjct:  144 IEQVGTISANSDSSVGRIIAEAMERVGKEGVITVEEGSGFEDELAVVEGMQFDRGYLSPYFINNQETMSAELENPFILLVDKKISNIRDLLPVLEGVAKASRPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_GEOLS (60 kDa chaperonin OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=groL PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.032e-28
Identity = 60/112 (53.57%), Postives = 84/112 (75.00%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I   +EIAQVGTISAN ++ IG++IA+AMEKVGKEGVIT+ + K +   LE VEGM+ DRGY+SPYF+++ +  +  LE+  IL+++KKISN+  ++ VLE   K  RPL+I
Sbjct:  138 IKDHKEIAQVGTISANNDKTIGDIIAEAMEKVGKEGVITVEEAKAMETSLETVEGMQFDRGYLSPYFVSDPERMEATLENATILIYDKKISNMKDMLPVLEQTAKSGRPLMI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_TOLAT (60 kDa chaperonin OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=groL PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.348e-28
Identity = 60/109 (55.05%), Postives = 83/109 (76.15%), Query Frame = 3
Query:   15 SEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            ++ IAQVGTISAN +  +G+LIA+AM+KVG++GVIT+ DG+ L +EL VVEGM+ DRGY+SPYFI  Q     EL+DP IL+ +KK+SN+  ++ VLE   K  +PL+I
Sbjct:  141 TKAIAQVGTISANSDENVGKLIAEAMDKVGRDGVITVEDGQGLQDELAVVEGMQFDRGYLSPYFINKQDTASVELDDPFILLVDKKVSNIREMLSVLEGVAKAGKPLVI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_SHESW (60 kDa chaperonin OS=Shewanella sp. (strain W3-18-1) GN=groL PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.348e-28
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 3
Query:   15 SEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            S+ IAQV TISAN +  IGE+IA AMEKVGKEGVIT+ +G+ L NEL+VVEGM+ DRGY+SPYFI   +    EL+ P +L+ +KKISN+  ++ +LE   K  +PLLI
Sbjct:  141 SKAIAQVATISANSDESIGEIIATAMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_SHEPC (60 kDa chaperonin OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=groL PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.348e-28
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 3
Query:   15 SEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            S+ IAQV TISAN +  IGE+IA AMEKVGKEGVIT+ +G+ L NEL+VVEGM+ DRGY+SPYFI   +    EL+ P +L+ +KKISN+  ++ +LE   K  +PLLI
Sbjct:  141 SKAIAQVATISANSDESIGEIIATAMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_SHEB8 (60 kDa chaperonin OS=Shewanella baltica (strain OS185) GN=groL PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.348e-28
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 3
Query:   15 SEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            S+ IAQV TISAN +  IGE+IA AMEKVGKEGVIT+ +G+ L NEL+VVEGM+ DRGY+SPYFI   +    EL+ P +L+ +KKISN+  ++ +LE   K  +PLLI
Sbjct:  141 SKAIAQVATISANSDESIGEIIATAMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_SHEB5 (60 kDa chaperonin OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=groL PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.348e-28
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 3
Query:   15 SEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            S+ IAQV TISAN +  IGE+IA AMEKVGKEGVIT+ +G+ L NEL+VVEGM+ DRGY+SPYFI   +    EL+ P +L+ +KKISN+  ++ +LE   K  +PLLI
Sbjct:  141 SKAIAQVATISANSDESIGEIIATAMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_FRATN (60 kDa chaperonin OS=Francisella tularensis subsp. novicida (strain U112) GN=groL PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.348e-28
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 3
Query:    9 STSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            S  + I QVGTISAN +  +G+LIA AM KVGKEGVIT+ +GK   +EL+VVEGM+ DRGY+SPYF TNQ+N   +LE+P IL+ +KKISN+  ++ VLE   K  R LLI
Sbjct:  139 SDPKSIEQVGTISANSDATVGKLIADAMAKVGKEGVITVEEGKGFEDELDVVEGMQFDRGYLSPYFATNQENMTTDLENPYILIVDKKISNIRDLLPVLEGVSKSGRALLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_DESDA (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=groL PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.348e-28
Identity = 60/108 (55.56%), Postives = 81/108 (75.00%), Query Frame = 3
Query:   18 EEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            +EIAQ+GTISAN +  IG +IA+AM KVGKEGVIT+ + K L   ++VVEGM+ DRGY+SPYF+TN +   CE+++P IL  EKKIS++  ++ VLE   K  RPL+I
Sbjct:  142 KEIAQIGTISANSDTTIGNIIAEAMAKVGKEGVITVEEAKGLETTMDVVEGMRFDRGYLSPYFVTNPEKMVCEMDNPYILCTEKKISSMKDMLPVLEQVAKVNRPLMI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_CYTH3 (60 kDa chaperonin OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=groL PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.348e-28
Identity = 59/112 (52.68%), Postives = 84/112 (75.00%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            IS S EIAQV TISAN + EIG++IA AM+KVGK+GVIT+ + K    E++ VEGM+ DRGY+SPYF+TN    + EL+ P IL+++KK+S++  ++ +LE  ++  RPLLI
Sbjct:  137 ISNSNEIAQVATISANNDHEIGKMIAHAMDKVGKDGVITVEEAKGTETEVKTVEGMQFDRGYLSPYFVTNTDKMEVELDRPYILIYDKKVSSMKELLPILEQVVQSGRPLLI 248          
The following BLAST results are available for this feature:
BLAST of DN618194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_MARMS1.032e-2858.4960 kDa chaperonin OS=Marinomonas sp. (strain MWYL1... [more]
CH60_GEOLS1.032e-2853.5760 kDa chaperonin OS=Geobacter lovleyi (strain ATC... [more]
CH60_TOLAT1.348e-2855.0560 kDa chaperonin OS=Tolumonas auensis (strain DSM... [more]
CH60_SHESW1.348e-2856.8860 kDa chaperonin OS=Shewanella sp. (strain W3-18-... [more]
CH60_SHEPC1.348e-2856.8860 kDa chaperonin OS=Shewanella putrefaciens (stra... [more]
CH60_SHEB81.348e-2856.8860 kDa chaperonin OS=Shewanella baltica (strain OS... [more]
CH60_SHEB51.348e-2856.8860 kDa chaperonin OS=Shewanella baltica (strain OS... [more]
CH60_FRATN1.348e-2857.6660 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_DESDA1.348e-2855.5660 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_CYTH31.348e-2852.6860 kDa chaperonin OS=Cytophaga hutchinsonii (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618194 ID=DN618194; Name=DN618194; organism=Citrus sinensis; type=EST; length=343bp
GAATGATCAGCACATCTGAGGAGATAGCACAGGTGGGGACAATATCAGCA
AATGGAGAGAGAGAAATTGGCGAGTTAATTGCAAAGGCCATGGAGAAGGT
CGGCAAAGAAGGAGTAATCACCATACACGATGGGAAGACATTATATAATG
AGTTGGAAGTTGTTGAAGGAATGAAGCTTGACAGGGGTTATATATCTCCT
TATTTCATAACCAACCAGAAAAATCAAAAATGTGAATTAGAAGATCCTCT
CATTCTTGTCCACGAGAAGAAAATCTCAAATCTAACTGCTGTTGTGAGGG
TATTAGAGCTGGCATTGAAGAGACAAAGGCCCTTATTGATTGT
back to top